Code

Analytical overhaul#58

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MaceKuailv merged 60 commits intomainMaceKuailv/seaduck:mainfrom analytical-overhaulMaceKuailv/seaduck:analytical-overhaulCopy head branch name to clipboardJun 28, 2023

+1,356-698

Commits

Commits on Jun 18, 2023

• wrap up issue#49, see if dask[array] works for pip

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  45f8c92

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• make it possible to use string as input for oceinterp

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• break-up analytical

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Commits on Jun 19, 2023

• fix notebooks as of break apart analytical

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• dict is all ordered, so remove message from oceinterp

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  af7cb6b

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• move wall cross to update_after_cell_change,and rename()

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  3c6bc8c

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• rename things a little more

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• super weird thing about smart_read causing unreproduceable face connection issue, seem to be fixed

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• have to roll back smart_read after so much struggle.

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• fully renamed and restructured analytical-step and cross-wall

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• implement subset operations

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• allow analytical step done by subset

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Commits on Jun 20, 2023

• the part that break cell wall cross narrowed

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• further narrow done

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• move beyond cross_cell_wall

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• every function is already using subset

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• remove which from cross_cell, get_vol and get_u_du()

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• finally remove all the masking

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• make sure we are not behind the previous branch

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• replace bool_masking with faster integer one

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• properly handle tf in to_next_stop

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Commits on Jun 22, 2023

• make the cross_wall_read more concise

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• simplify the rel2latlon step

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  af3e444

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• some renaming

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• update docstring within cross_wall and analytical_step

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• change some variable names

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• move astype int upstream

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• be more careful with int conversion, try again

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  a9b10f8

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• fix index in numba mode

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• remove astype int in ocedata

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• remove more astype, which is slightly slower

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  99aab44

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• refactor update_uvw_array

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• walk through lagrangian, did some style change

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• fix save_raw, at least I think it is fixed

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• tinker with __new__ to help a few functions make more sense

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• assert accurate coordinate transform for curvilinear local cartesian case

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• add test for accurate rectilinear convertion

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• forgot to save the file before commit

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• add coord reproduce tests in vertical and temporal direction

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Commits on Jun 24, 2023

• add coordineate reproduce test for oceanparcel scheme.

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Commits on Jun 25, 2023

• add vertical interpolation quantitative check

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• add randomized test for vertical velocity

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• apply snake case to oceinterp and add a test

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• cover all of oceinterp

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• add the stream function coservation as test cases

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• didnt add the file though

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Commits on Jun 27, 2023

• try fix type check

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  621f9e5

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• some more coverage

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• rename function get_masks.get_masks to get_masks.get_mask_arrays

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• add repeated get_mask test

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• improve coverage for masks. but the tests is 2 seconds slower.

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• address all warnings in tests. should be a little more careful with silence all runtime warnings...

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• quantitative tests for reading velocity

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• assert in eulerian

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• assert a lot in topology

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• assert for test_weight

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• minor fixes in test_lagrangian

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Commits on Jun 28, 2023

• add a test for the case in issue 55, but cannot reproduce.

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• move that test to a separate module

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• some more simple test on not out of bound

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