Add warning for future change of argument name for timeseries from asel -> atomgroup

[hmacdope]

Fixes #3911

Changes made in this Pull Request:

• Adds warning for future change of name in timeseries from asel to atomgroup.

PR Checklist

• Tests?
• CHANGELOG updated?
• Issue raised/referenced?

Developers certificate of origin

• I certify that this contribution is covered by the LGPLv2.1+ license as defined in our LICENSE and adheres to the Developer Certificate of Origin.

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📚 Documentation preview 📚: https://mdanalysis--4343.org.readthedocs.build/en/4343/

[pep8speaks]

Hello @hmacdope! Thanks for updating this PR. We checked the lines you've touched for PEP 8 issues, and found:

• In the file package/MDAnalysis/coordinates/DCD.py:

Line 294:1: W293 blank line contains whitespace
Line 331:80: E501 line too long (81 > 79 characters)

• In the file package/MDAnalysis/coordinates/base.py:

Line 990:52: E252 missing whitespace around parameter equals
Line 990:53: E252 missing whitespace around parameter equals
Line 1039:80: E501 line too long (81 > 79 characters)

• In the file package/MDAnalysis/coordinates/memory.py:

Line 491:80: E501 line too long (91 > 79 characters)
Line 540:80: E501 line too long (81 > 79 characters)

• In the file testsuite/MDAnalysisTests/coordinates/base.py:

Line 506:80: E501 line too long (87 > 79 characters)
Line 523:80: E501 line too long (84 > 79 characters)

• In the file testsuite/MDAnalysisTests/coordinates/test_memory.py:

Line 209:1: W293 blank line contains whitespace
Line 213:1: W293 blank line contains whitespace

Comment last updated at 2023-12-03 04:13:44 UTC

[github-actions]

Linter Bot Results:

Hi @hmacdope! Thanks for making this PR. We linted your code and found the following:

Some issues were found with the formatting of your code.

Code Location	Outcome
main package	⚠️ Possible failure
testsuite	⚠️ Possible failure

Please have a look at the darker-main-code and darker-test-code steps here for more details: https://github.com/MDAnalysis/mdanalysis/actions/runs/7074594385/job/19255806059

---

Please note: The black linter is purely informational, you can safely ignore these outcomes if there are no flake8 failures!

[codecov]

Codecov Report

All modified and coverable lines are covered by tests ✅

Comparison is base (f4005db) 93.36% compared to head (2954931) 93.37%.

Additional details and impacted files

@@            Coverage Diff             @@
##           develop    #4343     +/-   ##
==========================================
  Coverage    93.36%   93.37%             
==========================================
  Files          170      184     +14     
  Lines        22325    23453   +1128     
  Branches      4079     4085      +6     
==========================================
+ Hits         20844    21899   +1055     
- Misses         963     1036     +73     
  Partials       518      518             

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[IAlibay]

Cheers, couple of things though.

[IAlibay]

Same as above, we should support both keyword arguments and docs should reflect this.

[IAlibay]

As above

[hmacdope]

Done :)

[hmacdope]

@IAlibay still WIP ill ping for review when ready

[RMeli]

@hmacdope given your comment above I converted it to a draft for now.

[hmacdope]

@IAlibay @RMeli assuming tests pass I think this is ready for another review.

[IAlibay]

Cheers