Change name of asel in timeseries to something more comprehensible.

[hmacdope]

    I know we're just doing the same as what memoryreader does, but it just struck me that `asel` is such a weird parameter name for an atomgroup. Not much we can do here, but if I'm not the only one maybe we can consider changing this for 3.0 (in a different PR, let's get this merged!).

Originally posted by @IAlibay in #3890 (comment)

I agree with @IAlibay that the name asel is a little confusing and could do with a change in 3.0.
leave your opinions below.

Will require a deprecation warning first if we go ahead.

[orbeckst]

yes, please, asel ▶️ selection ? EDIT: atomgroup (see below)

[IAlibay]

yes, please, asel ▶️ selection ?

asel is an atomgroup right? atomgroup might be closer to what we do elsewhere?

[orbeckst]

yeah, you're right

[hmacdope]

@MDAnalysis/gsoc-mentors making this a gsoc-starter issue

[IAlibay]

@hmacdope isn't this a 3.0 targeted change? We wouldn't be able to merge it during the application period.

[hmacdope]

Ah yes sorry I meant the deprecation warning part. Do we think that is suitable ?

[IAlibay]

Ah yes sorry I meant the deprecation warning part. Do we think that is suitable ?

Sounds good to me!

[tushdemort]

hi @hmacdope, I want to work on MDAnalysis as part of GSoC and wanted to take up this issue. Seems like it won't get merged during the application period. However, can I work on it?

[hmacdope]

Please go ahead and make a PR! If you make a fix it can be merged in the application period.

[tushdemort]

Hi @hmacdope

I have made changes for asel in timeseries wherever the function is defined and called. I have also made changes in the test code for the same. Do you think sample_atom_group is a good variable name in place of asel (can be a little wordy)? atom_group and atomgroup are used as variable/function names in a couple of files.

Also, I didn't understand the discussion regarding the deprecation warning, can you explain it a bit?

[IAlibay]

@hmacdope I'm reopening to keep an issue to track the removal of asel - please do reclose if there's another one already.

[hmacdope]

Cheers, nah this is it.