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update master with develop #185

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merged 30 commits into from
Jan 26, 2022
Merged

update master with develop #185

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c029784
Pin versions to develop (#144)
lilyminium Apr 9, 2021
c249026
Pin jinja2 version (#169)
IAlibay Jun 21, 2021
c839440
Add helix analysis notebook (#126)
lilyminium Jun 21, 2021
1fa759d
Fix installation instructions (#161)
lilyminium Jun 21, 2021
f789446
Example notebooks for HydrogenBondAnalysis (#133)
Jun 23, 2021
fef611e
flatten pc.mean in PCA projection tutorial (#184)
orbeckst Jan 21, 2022
3e87740
Add examples of selecting groups from other groups
mieczyslaw Sep 25, 2020
0df424f
Documents for parallel analysis (#102)
yuxuanzhuang Oct 1, 2020
0662a8c
Change intersphinx link to latest objects.inv (#107)
lilyminium Oct 1, 2020
1487ad1
Contacts (#84)
lilyminium Oct 6, 2020
4187264
updated align (#73)
lilyminium Dec 2, 2020
ae6b5fe
Move quickstart up to top level (#113)
lilyminium Dec 6, 2020
2ffad0a
Add readthedocs config (#68)
lilyminium Dec 7, 2020
8903379
Add and fix links to API docs and Quickstart (#129)
lilyminium Jan 4, 2021
21ec860
Update general notebooks (#124)
lilyminium Jan 4, 2021
d9f7508
Update README.rst
lilyminium Jan 5, 2021
4803383
Use RTD to make PDF of the docs (#135)
lilyminium Mar 4, 2021
fb08ba0
Remove whitespace (#145)
lilyminium May 19, 2021
547ef0b
Update pca (#120)
lilyminium May 19, 2021
6b1104b
Update install and selection notes (#127)
lilyminium May 19, 2021
b77c3f2
add okwarnings (#162)
lilyminium Jun 20, 2021
e73bdee
Add Binder badge to examples (#131)
lilyminium Jun 20, 2021
566937b
Add new notebooks (#125)
lilyminium Jun 21, 2021
be59ad8
fix sitemap (#173)
orbeckst Oct 16, 2021
3b73498
fix broken link in transformations
orbeckst Dec 5, 2021
d6250c5
fix links in transformations (#179)
orbeckst Dec 5, 2021
380dd66
Fix broken link to MDAnalysisData (#180)
hmacdope Dec 7, 2021
38bba55
Add UserGuide example of custom compiler flags march=native build (#…
hmacdope Dec 8, 2021
120b031
Merge pull request #186 from MDAnalysis/port-master
lilyminium Jan 22, 2022
53079fa
Merge branch 'master' into develop
lilyminium Jan 22, 2022
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3 changes: 2 additions & 1 deletion doc/source/AUTHORS
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Expand Up @@ -29,4 +29,5 @@ Chronological list of authors
- Yuxuan Zhuang
- Mieczyslaw Torchala
2021
- Hugo MacDermott-Opeskin
- Paul Smith
- Hugo MacDermott-Opeskin
2 changes: 2 additions & 0 deletions doc/source/examples/analysis/README.rst
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Expand Up @@ -52,3 +52,5 @@ them separately, e.g.::
.. include:: /examples/analysis/reduced_dimensions/README.rst

.. include:: /examples/analysis/polymers_and_membranes/README.rst

.. include:: /examples/analysis/hydrogen_bonds/README.rst
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