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17 Open 152 Closed
17 Open 152 Closed
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Issues list

Smudgeplot predicts polyploidy
#182 opened Dec 8, 2024 by leio0326
8
Catch exceptions of hetmer count
#181 opened Dec 6, 2024 by KamilSJaron
Adjusting genomescope parameters for long reads
#180 opened Dec 5, 2024 by bioannap
smudgeplot.py hetmers not producing kmerpairs_text.smu (.trim.ktab only) bug Something isn't working genomescope included
#179 opened Dec 3, 2024 by gemmacol
@thegenemyers
6
Histogram was gone 0.4.0 Arched For things related to sploidyplot branch enhancement New feature or request smudgeplot included if smudgeplot was posted with the quesiton / problem
#177 opened Nov 28, 2024 by xiekunwhy
4
Handling homozygous genomes with Arched version 0.4.0 Arched For things related to sploidyplot branch dev for issues related to development branch enhancement New feature or request
#176 opened Nov 26, 2024 by LeoVincenzi
1
Smudgeplot interpretation - allopolyploid or coverage too low?
#164 opened Oct 16, 2024 by RSchley
3
plot err 0.3.0 Oriel Upcoming version of smudgeplot 0.9.9 Sliding For the future release of sploidyplot_obj branch data included for issues with .smu file potential problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?) smudgeplot included if smudgeplot was posted with the quesiton / problem
#146 opened Apr 10, 2024 by zskey-zn
@KamilSJaron
6
Process was automatically killed 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version performance issues regarding scalability and performance of the method.
#136 opened Nov 2, 2023 by yanjw123
3
Request for feedback on smudgeplot optimization and interpretation (diploid? haploid?) 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version 0.3.0 Oriel Upcoming version of smudgeplot genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#133 opened Sep 13, 2023 by margaretc-ho
6
Prepare a testing battery 0.9.9 Sliding For the future release of sploidyplot_obj branch dev for issues related to development branch genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#127 opened Aug 22, 2023 by KamilSJaron
@KamilSJaron
1
Interpreting smudgeplot output 0.2.5 Double-hung Smudgeplot done with the 0.2.5 Double-hung with curtains version 0.3.0 Oriel Upcoming version of smudgeplot genomescope included smudgeplot included if smudgeplot was posted with the quesiton / problem
#117 opened Jun 12, 2023 by eweinheimer
10
half genome length from tutorial-strawberry genomescope included potential problems for potential problems given different scenarios (How does XXX infulence sumdgeplot?) smudgeplot included if smudgeplot was posted with the quesiton / problem
#84 opened Mar 2, 2021 by fancyge
4
Using smudgeplot with very high ploidy levels smudgeplot included if smudgeplot was posted with the quesiton / problem
#66 opened Jul 31, 2020 by cmdoret
4
Update wiki 0.3.0 Oriel Upcoming version of smudgeplot
#54 opened May 20, 2020 by KamilSJaron
3 tasks
@KamilSJaron
2
Bad examples of smudgeplot smudgeplot included if smudgeplot was posted with the quesiton / problem
#37 opened May 15, 2019 by KamilSJaron
3
set up travis testing performance issues regarding scalability and performance of the method.
#8 opened Aug 24, 2018 by KamilSJaron
@KamilSJaron
1
ProTip! Updated in the last three days: updated:>2024-12-09.