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Kalan-Lab

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  1. zol zol Public

    zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

    Python 50 4

  2. lsaBGC lsaBGC Public

    lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

    Python 37 4

  3. lsaBGC-Pan lsaBGC-Pan Public

    lsaBGC - suite for pan-BGC-omics analysis

    Python 18 2

  4. codoff codoff Public

    codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.

    Python 11 1

  5. Bioassay-ML-Image-Classification Bioassay-ML-Image-Classification Public

    This repository contains a script for training a machine learning model to classify images into categories. The model is trained on custom images provided by the user.

    Jupyter Notebook 1

  6. Swaney_etal_CobamidePaper Swaney_etal_CobamidePaper Public

    Code for data analysis and visualization in Swaney et al. mSystems 2022

    R

Repositories

Showing 10 of 15 repositories
  • zol Public

    zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)

    Kalan-Lab/zol’s past year of commit activity
    Python 50 BSD-3-Clause 4 1 0 Updated Nov 16, 2024
  • Salamzade_Kalan_BGC_Evolution_Review Public

    Code for small de novo (re-)analyses for Salamzade & Kalan minireview of BGC evolution

    Kalan-Lab/Salamzade_Kalan_BGC_Evolution_Review’s past year of commit activity
    R 0 BSD-3-Clause 0 0 0 Updated Nov 14, 2024
  • Salamzade_etal_zol Public

    Misc. code & scripts associated with the zol & fai manuscript.

    Kalan-Lab/Salamzade_etal_zol’s past year of commit activity
    Batchfile 0 BSD-3-Clause 0 0 0 Updated Sep 12, 2024
  • lsaBGC-Pan Public

    lsaBGC - suite for pan-BGC-omics analysis

    Kalan-Lab/lsaBGC-Pan’s past year of commit activity
    Python 18 BSD-3-Clause 2 1 0 Updated Aug 28, 2024
  • lsaBGC Public

    lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters

    Kalan-Lab/lsaBGC’s past year of commit activity
    Python 37 BSD-3-Clause 4 0 0 Updated Aug 5, 2024
  • Bioassay-ML-Image-Classification Public

    This repository contains a script for training a machine learning model to classify images into categories. The model is trained on custom images provided by the user.

    Kalan-Lab/Bioassay-ML-Image-Classification’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Aug 2, 2024
  • codoff Public

    codoff: a program to measure the irregularity of the codon usage for a single genomic region (e.g. a BGC, phage, etc.) relative to the full genome.

    Kalan-Lab/codoff’s past year of commit activity
    Python 11 BSD-3-Clause 1 0 0 Updated Jul 31, 2024
  • DeLaCruz_Townsend_etal_PorcineSkinMicrobiome Public

    Code for data analysis and figures for the manuscript "Discovering the Microbial Community and Antifungals within the Porcine Skin Microbiome" by K. De La Cruz and E.C. Townsend et al.

    Kalan-Lab/DeLaCruz_Townsend_etal_PorcineSkinMicrobiome’s past year of commit activity
    R 0 0 0 0 Updated Apr 30, 2024
  • Townsend_etal_StillNotSterile Public

    Code for data analysis and figures for the manuscript "Still Not Sterile: Chlorhexidine gluconate does not completely reduce skin microbial bioburden and promotes pathogen overabundance in patients undergoing elective surgeries" by E.C. Townsend et al.

    Kalan-Lab/Townsend_etal_StillNotSterile’s past year of commit activity
    R 0 0 0 0 Updated Apr 11, 2024
  • Townsend_etal_WhatIsSlough Public

    Code for data analysis and figures for the manuscript "What is Slough? Defining the proteomic and microbial composition of wound slough and its implications for wound healing" by E.C. Townsend et al.

    Kalan-Lab/Townsend_etal_WhatIsSlough’s past year of commit activity
    R 0 0 0 0 Updated Jan 30, 2024
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