GitHub - Kalan-Lab/Townsend_etal_StillNotSterile: Code for data analysis and figures for the manuscript "Still Not Sterile: Chlorhexidine gluconate does not completely reduce skin microbial bioburden and promotes pathogen overabundance in patients undergoing elective surgeries" by E.C. Townsend et al.

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Code for data analysis and figures for the manuscript "Still Not Sterile: Chlorhexidine gluconate does not completely reduce skin microbial bioburden and promotes pathogen overabundance in patients undergoing elective surgeries" by E.C. Townsend et al.

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Name		Name	Last commit message	Last commit date
Latest commit History 14 Commits
MAASLIN		MAASLIN
AllForearmResultsFIN.csv		AllForearmResultsFIN.csv
BrayCHANGE_fromRespectiveViableCSS_BASELINE.csv		BrayCHANGE_fromRespectiveViableCSS_BASELINE.csv
CHG-CFU-DF.csv		CHG-CFU-DF.csv
CHG_StaphBlast_Merged_pivot.csv		CHG_StaphBlast_Merged_pivot.csv
CHG_Study_Rcode.R		CHG_Study_Rcode.R
CHGsilva_RelativeOUT.genus.csv		CHGsilva_RelativeOUT.genus.csv
CHGstudy_qPCR_df.csv		CHGstudy_qPCR_df.csv
Concatenated_Results_KMA.csv.zip		Concatenated_Results_KMA.csv.zip
ECT-multipleBodyPMAxx.csv		ECT-multipleBodyPMAxx.csv
FollowUP_to_SELF_ELSE_baseline.csv		FollowUP_to_SELF_ELSE_baseline.csv
LK16S009_CHG_Study_Manufest_Server_HealthData.txt		LK16S009_CHG_Study_Manufest_Server_HealthData.txt
LK16S011_CHG_Study_Manufest_Server_HealthData.txt		LK16S011_CHG_Study_Manufest_Server_HealthData.txt
LKMB002_Metadata_UPDATED.csv		LKMB002_Metadata_UPDATED.csv
PathBlast.csv		PathBlast.csv
StaphSpeciesBLAST.csv		StaphSpeciesBLAST.csv
table-CHGstudyPart1-dada2.qza		table-CHGstudyPart1-dada2.qza
table-CHGstudyPart2-dada2.qza		table-CHGstudyPart2-dada2.qza
taxonomy-Silva2022-CHGstudyPart1.qza		taxonomy-Silva2022-CHGstudyPart1.qza
taxonomy-Silva2022-CHGstudyPart2.qza		taxonomy-Silva2022-CHGstudyPart2.qza