Updating master branch (#185)

* Create pythonpublish.yml * updated to 0.1.0 including pip support * Create .pypirc * removed token * corrected file name * removed GDAL dep * updated file content * corrected folder name * version 0.1.1, now REALLY with pip and github actions * updated pypi installation instruction * added quantiles * added sanity checks * writing geojson instead shp * Bump pip from 20.0.2 to 21.1 Bumps [pip](https://github.com/pypa/pip) from 20.0.2 to 21.1. - [Release notes](https://github.com/pypa/pip/releases) - [Changelog](https://github.com/pypa/pip/blob/main/NEWS.rst) - [Commits](pypa/pip@20.0.2...21.1) --- updated-dependencies: - dependency-name: pip dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump ipython from 7.13.0 to 7.16.3 in /docs Bumps [ipython](https://github.com/ipython/ipython) from 7.13.0 to 7.16.3. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](ipython/ipython@7.13.0...7.16.3) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump ipython from 7.13.0 to 7.16.3 Bumps [ipython](https://github.com/ipython/ipython) from 7.13.0 to 7.16.3. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](ipython/ipython@7.13.0...7.16.3) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump numpy from 1.18.1 to 1.21.0 Bumps [numpy](https://github.com/numpy/numpy) from 1.18.1 to 1.21.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt) - [Commits](numpy/numpy@v1.18.1...v1.21.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump numpy from 1.18.1 to 1.21.0 in /docs Bumps [numpy](https://github.com/numpy/numpy) from 1.18.1 to 1.21.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst.txt) - [Commits](numpy/numpy@v1.18.1...v1.21.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> * Bump numpy from 1.21.0 to 1.22.0 in /docs (#150) Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst) - [Commits](numpy/numpy@v1.21.0...v1.22.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump numpy from 1.21.0 to 1.22.0 (#151) Bumps [numpy](https://github.com/numpy/numpy) from 1.21.0 to 1.22.0. - [Release notes](https://github.com/numpy/numpy/releases) - [Changelog](https://github.com/numpy/numpy/blob/main/doc/HOWTO_RELEASE.rst) - [Commits](numpy/numpy@v1.21.0...v1.22.0) --- updated-dependencies: - dependency-name: numpy dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump nbconvert from 5.6.1 to 6.3.0 (#153) Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 5.6.1 to 6.3.0. - [Release notes](https://github.com/jupyter/nbconvert/releases) - [Commits](jupyter/nbconvert@5.6.1...6.3.0) --- updated-dependencies: - dependency-name: nbconvert dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump nbconvert from 5.6.1 to 6.3.0 in /docs (#152) Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 5.6.1 to 6.3.0. - [Release notes](https://github.com/jupyter/nbconvert/releases) - [Commits](jupyter/nbconvert@5.6.1...6.3.0) --- updated-dependencies: - dependency-name: nbconvert dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump setuptools from 49.6 to 65.5.1 in /docs (#158) Bumps [setuptools](https://github.com/pypa/setuptools) from 49.6 to 65.5.1. - [Release notes](https://github.com/pypa/setuptools/releases) - [Changelog](https://github.com/pypa/setuptools/blob/main/CHANGES.rst) - [Commits](pypa/setuptools@v49.6.0...v65.5.1) --- updated-dependencies: - dependency-name: setuptools dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump nbconvert from 6.3.0 to 6.5.1 (#154) Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 6.3.0 to 6.5.1. - [Release notes](https://github.com/jupyter/nbconvert/releases) - [Commits](jupyter/nbconvert@6.3.0...6.5.1) --- updated-dependencies: - dependency-name: nbconvert dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump nbconvert from 6.3.0 to 6.5.1 in /docs (#155) Bumps [nbconvert](https://github.com/jupyter/nbconvert) from 6.3.0 to 6.5.1. - [Release notes](https://github.com/jupyter/nbconvert/releases) - [Commits](jupyter/nbconvert@6.3.0...6.5.1) --- updated-dependencies: - dependency-name: nbconvert dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump wheel from 0.33.6 to 0.38.1 in /docs (#156) Bumps [wheel](https://github.com/pypa/wheel) from 0.33.6 to 0.38.1. - [Release notes](https://github.com/pypa/wheel/releases) - [Changelog](https://github.com/pypa/wheel/blob/main/docs/news.rst) - [Commits](pypa/wheel@0.33.6...0.38.1) --- updated-dependencies: - dependency-name: wheel dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump setuptools from 49.6 to 65.5.1 (#157) Bumps [setuptools](https://github.com/pypa/setuptools) from 49.6 to 65.5.1. - [Release notes](https://github.com/pypa/setuptools/releases) - [Changelog](https://github.com/pypa/setuptools/blob/main/CHANGES.rst) - [Commits](pypa/setuptools@v49.6.0...v65.5.1) --- updated-dependencies: - dependency-name: setuptools dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump ipython from 7.16.3 to 8.10.0 in /docs (#159) Bumps [ipython](https://github.com/ipython/ipython) from 7.16.3 to 8.10.0. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](ipython/ipython@7.16.3...8.10.0) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump ipython from 7.16.3 to 8.10.0 (#160) Bumps [ipython](https://github.com/ipython/ipython) from 7.16.3 to 8.10.0. - [Release notes](https://github.com/ipython/ipython/releases) - [Commits](ipython/ipython@7.16.3...8.10.0) --- updated-dependencies: - dependency-name: ipython dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * updated dependencies (#161) * v0.1.2 (#162) * updated dependencies * correct dtype of list with selection conflict type * got rid of fiona requirement * improved downloading of example data * deprecated plotting for now as sklearn API has changed * v0.1.2 * Bump pip from 21.1 to 23.3 (#183) Bumps [pip](https://github.com/pypa/pip) from 21.1 to 23.3. - [Changelog](https://github.com/pypa/pip/blob/main/NEWS.rst) - [Commits](pypa/pip@21.1...23.3) --- updated-dependencies: - dependency-name: pip dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> * Bump jinja2 from 2.11.3 to 3.1.3 in /docs (#184) Bumps [jinja2](https://github.com/pallets/jinja) from 2.11.3 to 3.1.3. - [Release notes](https://github.com/pallets/jinja/releases) - [Changelog](https://github.com/pallets/jinja/blob/main/CHANGES.rst) - [Commits](pallets/jinja@2.11.3...3.1.3) --- updated-dependencies: - dependency-name: jinja2 dependency-type: direct:production ... Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] <[email protected]> Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
JannisHoch · Jan 12, 2024 · 24f403e · 24f403e
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diff --git a/.github/workflows/python-publish.yml b/.github/workflows/python-publish.yml
@@ -0,0 +1,38 @@
+# This workflow will upload a Python Package using Twine when a release is created
+# For more information see: https://help.github.com/en/actions/language-and-framework-guides/using-python-with-github-actions#publishing-to-package-registries
+
+# This workflow uses actions that are not certified by GitHub.
+# They are provided by a third-party and are governed by
+# separate terms of service, privacy policy, and support
+# documentation.
+
+# content copied from https://github.com/actions/starter-workflows/blob/main/ci/python-publish.yml
+
+name: Upload Python Package
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  deploy:
+
+    runs-on: ubuntu-latest
+
+    steps:
+    - uses: actions/checkout@v2
+    - name: Set up Python
+      uses: actions/setup-python@v2
+      with:
+        python-version: '3.x'
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        pip install build
+    - name: Build package
+      run: python -m build
+    - name: Publish package
+      uses: pypa/gh-action-pypi-publish@27b31702a0e7fc50959f5ad993c78deac1bdfc29
+      with:
+        user: __token__
+        password: ${{ secrets.PYPI_API_TOKEN }}
diff --git a/.vscode/settings.json b/.vscode/settings.json
@@ -1,4 +1,4 @@
 {
     "restructuredtext.confPath": "${workspaceFolder}\\docs",
-    "python.pythonPath": "C:\\Users\\Icke\\anaconda3\\envs\\conflict_model\\python.exe"
+    "python.pythonPath": "C:\\Users\\hoch0001\\AppData\\Local\\Continuum\\anaconda3\\envs\\copro\\python.exe"
 }
diff --git a/copro/__init__.py b/copro/__init__.py
@@ -13,4 +13,4 @@
 
 __author__ = """Jannis M. Hoch, Sophie de Bruin, Niko Wanders"""
 __email__ = '[email protected]'
-__version__ = '0.0.8'
+__version__ = '0.1.2'
diff --git a/copro/conflict.py b/copro/conflict.py
@@ -105,7 +105,7 @@ def conflict_in_previous_year(config, conflict_gdf, extent_gdf, sim_year, check_
 
     # merge the dataframes with polygons and conflict information, creating a sub-set of polygons/regions
     data_merged = gpd.sjoin(temp_sel_year, extent_gdf)
-
+    
     conflicts_per_poly = data_merged.id.groupby(data_merged['watprovID']).count().to_frame().rename(columns={"id": 'conflict_count'})
 
     # loop through all polygons and check if exists in sub-set

diff --git a/copro/plots.py b/copro/plots.py
@@ -101,8 +101,13 @@ def plot_ROC_curve_n_times(ax, clf, X_test, y_test, tprs, aucs, mean_fpr, **kwar
         list: lists with true positive rates and area-under-curve values per plot.
     """    
 
+    raise DeprecationWarning('Plotting API in sklearn is changed, function needs updating.')
+
     viz = metrics.plot_roc_curve(clf, X_test, y_test, ax=ax,
                             	 alpha=0.15, color='b', lw=1, label=None, **kwargs)
+
+    # rfc_disp = metrics.RocCurveDisplay.from_estimator(clf, X_test, y_test, ax=ax,
+    #                                                   alpha=0.15, color='b', lw=1, label=None, **kwargs)
 
     interp_tpr = np.interp(mean_fpr, viz.fpr, viz.tpr)
     interp_tpr[0] = 0.0
@@ -121,6 +126,8 @@ def plot_ROC_curve_n_mean(ax, tprs, aucs, mean_fpr, **kwargs):
         mean_fpr (array): array with mean false positive rate.
     """    
 
+    raise DeprecationWarning('Plotting API in sklearn is changed, function needs updating.')
+
     mean_tpr = np.mean(tprs, axis=0)
     mean_tpr[-1] = 1.0
     mean_auc = metrics.auc(mean_fpr, mean_tpr)

diff --git a/copro/scripts/copro_runner.py b/copro/scripts/copro_runner.py
@@ -90,16 +90,18 @@ def cli(cfg, make_plots=True, verbose=False):
         out_y_df = copro.evaluation.fill_out_df(out_y_df, y_df)
         out_dict = copro.evaluation.fill_out_dict(out_dict, eval_dict)
 
+        ## NOTE 15-Mar-2023: ROC plotting has been changed in sklearn, needs updating
         #- plot ROC curve per model execution
-        tprs, aucs = copro.plots.plot_ROC_curve_n_times(ax1, clf, X_df.to_numpy(), y_df.y_test.to_list(),
-                                                                    trps, aucs, mean_fpr)
-
-    #- plot mean ROC curve
-    copro.plots.plot_ROC_curve_n_mean(ax1, tprs, aucs, mean_fpr)
-    #- save plot
-    plt.savefig(os.path.join(out_dir_REF, 'ROC_curve_per_run.png'), dpi=300, bbox_inches='tight')
-    #- save data for plot
-    copro.evaluation.save_out_ROC_curve(tprs, aucs, out_dir_REF)
+        # tprs, aucs = copro.plots.plot_ROC_curve_n_times(ax1, clf, X_df.to_numpy(), y_df.y_test.to_list(),
+        #                                                             trps, aucs, mean_fpr)
+
+    ## NOTE 15-Mar-2023: ROC plotting has been changed in sklearn, needs updating
+    # #- plot mean ROC curve
+    # copro.plots.plot_ROC_curve_n_mean(ax1, tprs, aucs, mean_fpr)
+    # #- save plot
+    # plt.savefig(os.path.join(out_dir_REF, 'ROC_curve_per_run.png'), dpi=300, bbox_inches='tight')
+    # #- save data for plot
+    # copro.evaluation.save_out_ROC_curve(tprs, aucs, out_dir_REF)
 
     #- save output dictionary to csv-file
     copro.utils.save_to_csv(out_dict, out_dir_REF, 'evaluation_metrics')

diff --git a/copro/scripts/postprocessing/plot_value_over_time.py b/copro/scripts/postprocessing/plot_value_over_time.py
@@ -19,7 +19,7 @@ def main(input_dir=None, statistics=None, polygon_id=None, column=None, title=No
     """Quick and dirty function to plot the develoment of a column in the outputted geojson-files over time.
     The script uses all geoJSON-files located in input-dir and retrieves values from them.
     Possible to plot obtain development for multiple polygons (indicated via their ID) or entire study area.
-    If the latter, then different statistics can be chosen (mean, max, min, std).
+    If the latter, then different statistics can be chosen (mean, max, min, std, median, 'q05', 'q10', 'q90', 'q95').
 
     Args:
         input-dir (str): path to input directory with geoJSON-files located per projection year.
@@ -44,18 +44,23 @@ def main(input_dir=None, statistics=None, polygon_id=None, column=None, title=No
         polygon_id = 'all'
         click.echo('INFO: selected statistcal method is {}'.format(statistics))
         # create a suffix to be used for output files
-        suffix = '_all_{}'.format(statistics)
+        suffix = 'all_{}'.format(statistics)
+        # check if supported statistical function is selected
+        if statistics not in ['mean', 'max', 'min', 'std', 'median', 'q05', 'q10', 'q90', 'q95']:
+            raise ValueError('ERROR: {} is not a supported statistical method'.format(statistics))
+
+    else:
+        click.echo('INFO: sampling from IDs'.format(polygon_id))
+        # for IDs, no statistical function can be applied as it's only one value...
+        if statistics != None:
+            raise Warning('WARNING: if one or more IDs are provided, the statistical function is neglected.')
 
     # absolute path to input_dir
     input_dir = os.path.abspath(input_dir)
     click.echo('INFO: getting geojson-files from {}'.format(input_dir))
 
     # collect all files in input_dir
-    all_files = glob.glob(os.path.join(input_dir, '*.geojson'))
-
-    if verbose: 
-        if polygon_id != 'all': 
-            click.echo('DEBUG: sampling from IDs'.format(polygon_id))
+    all_files = glob.glob(os.path.join(input_dir, '*.geojson'))            
 
     # create dictionary with list for areas (either IDs or entire study area) to be sampled from
     out_dict = dict()
@@ -103,9 +108,14 @@ def main(input_dir=None, statistics=None, polygon_id=None, column=None, title=No
         else:
             # compute mean value over column
             if statistics == 'mean': vals = df[column].mean()
+            if statistics == 'median': vals = df[column].median()
             if statistics == 'max': vals = df[column].max()
             if statistics == 'min': vals = df[column].min()
             if statistics == 'std': vals = df[column].std()
+            if statistics == 'q05': vals = df[column].quantile(.05)
+            if statistics == 'q10': vals = df[column].quantile(.1)
+            if statistics == 'q90': vals = df[column].quantile(.9)
+            if statistics == 'q95': vals = df[column].quantile(.95)
             # append this value to list in dict
             idx_list = out_dict[polygon_id]
             idx_list.append(vals)

diff --git a/copro/selection.py b/copro/selection.py
@@ -37,6 +37,7 @@ def filter_conflict_properties(gdf, config):
                 pass
             else:
                 if config.getboolean('general', 'verbose'): print('DEBUG: filtering key', key, 'with value(s)', selection_criteria[key])
+                selection_criteria[key] = [eval(i) for i in selection_criteria[key]]
                 gdf = gdf[gdf[key].isin(selection_criteria[key])]
 
     return gdf
@@ -184,8 +185,7 @@ def select(config, out_dir, root_dir):
     global_df = utils.global_ID_geom_info(polygon_gdf)
 
     # save conflict data and polygon to shp-file
-    # TODO: save as geoJSON rather than shp
-    gdf.to_file(os.path.join(out_dir, 'selected_conflicts.shp'), crs='EPSG:4326')
-    polygon_gdf.to_file(os.path.join(out_dir, 'selected_polygons.shp'), crs='EPSG:4326')
+    gdf.to_file(os.path.join(out_dir, 'selected_conflicts.geojson'), driver='GeoJSON', crs='EPSG:4326')
+    polygon_gdf.to_file(os.path.join(out_dir, 'selected_polygons.geojson'), driver='GeoJSON', crs='EPSG:4326')
 
     return gdf, polygon_gdf, global_df
diff --git a/docs/Installation.rst b/docs/Installation.rst
@@ -32,9 +32,11 @@ To install CoPro in editable mode in this environment, run this command next in
 From PyPI
 ------------
 
-.. todo::
+To install CoPro directly from PyPI, use the following command.
+
+.. code-block:: console
 
-    This is not yet supported. Feel invited to provide a pull request enabling installation via PyPI.
+    pip install copro
 
 From conda
 ------------

diff --git a/docs/requirements.rtd.txt b/docs/requirements.rtd.txt
@@ -1,6 +1,6 @@
 pip>=19.2.3
 bump2version==0.5.11
-wheel==0.33.6
+wheel==0.38.1
 watchdog==0.9.0
 flake8==3.7.8
 tox==3.14.0
@@ -12,14 +12,14 @@ pytest-runner==5.1
 click==7.1.1
 geopandas==0.7.0
 matplotlib==3.2.1
-numpy==1.18.1
+numpy==1.22.0
 pandas==1.0.3
 rasterio==1.1.3
 rioxarray==0.0.26
 xarray==0.15.0
-ipython==7.13.0
+ipython==8.10.0
 notebook>=6.1.5
-nbconvert==5.6.1
+nbconvert==6.5.1
 netCDF4==1.5.3
 scikit-learn==0.22.1
 descartes==1.1.0
@@ -28,6 +28,6 @@ git+https://github.com/pandas-dev/pydata-sphinx-theme.git@master
 rasterstats==0.14.0
 seaborn==0.10.1
 nbsphinx==0.8.5
-jinja2==2.11.3
+jinja2==3.1.3
 nbsphinx_link==1.3.0
-setuptools==49.6
+setuptools==65.5.1
diff --git a/environment.yml b/environment.yml
@@ -4,11 +4,11 @@ channels:
   - conda-forge
 
 dependencies:
-  - python>=3.6
-  - xarray==0.15.1
-  - pandas==1.0.3
-  - numpy==1.18.1
-  - matplotlib==3.2.1
+  - python>=3.9
+  - xarray>=0.15.1
+  - pandas>=1.0.3
+  - numpy>=1.18.1
+  - matplotlib>=3.2.1
   - rtree>=0.9.4
   - pytest>=5.4.2
   - pytest-runner
@@ -17,7 +17,7 @@ dependencies:
   - ipython
   - notebook
   - nbconvert
-  - ipykernel==5.3.2
+  - ipykernel>=5.3.2
   - scikit-learn>=0.23.2
   - netcdf4
   - ConfigParser
@@ -27,9 +27,7 @@ dependencies:
   - colorama
   - setuptools>=49.6
   - pillow==8.1.0
-  - pip:
-    - geopandas==0.8.0
-    - rasterio==1.1.0
-    - fiona
-    - rasterstats==0.14.0
-
+  - geopandas>=0.8.0
+  - rasterio>=1.1.0
+  - rasterstats>=0.14.0
+
diff --git a/example/_scripts/download_example_data.sh b/example/_scripts/download_example_data.sh
@@ -5,15 +5,15 @@
 
 echo download zip-file
 # for WIN
-curl https://zenodo.org/record/4617719/files/example_data.zip -o example_data.zip
+#curl https://zenodo.org/record/4617719/files/example_data.zip -o example_data.zip
 # for UNIX
-wget curl https://zenodo.org/record/4617719/files/example_data.zip
+wget https://zenodo.org/record/4617719/files/example_data.zip
 
 echo unzip data
 unzip example_data.zip -d example_data
 
 echo copy data
-cp example_data ../example_data
+mv example_data/example_data ../example_data
 
 echo remove zip-file
-rm example_data.zip
+rm -r example_data*
diff --git a/requirements_dev.txt b/requirements_dev.txt
@@ -1,14 +1,14 @@
-pip==20.0.2
+pip==23.3
 click==7.1.2
 configparser==5.0.0
 descartes==1.1.0
 geopandas==0.8.0
-ipython==7.13.0
+ipython==8.10.0
 matplotlib==3.2.1
-nbconvert==5.6.1
+nbconvert==6.5.1
 netcdf4==1.5.3
 notebook>=6.1.5
-numpy==1.18.1
+numpy==1.22.0
 pandas==1.0.3
 pyproj==2.6.0
 pytest==5.4.2
@@ -23,4 +23,4 @@ tox==3.14.0
 coverage==4.5.4
 rasterstats==0.14
 seaborn==0.10.1
-setuptools==49.6
+setuptools==65.5.1
diff --git a/setup.cfg b/setup.cfg
@@ -1,5 +1,5 @@
 [bumpversion]
-current_version = 0.0.8
+current_version = 0.1.2
 commit = True
 tag = True