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Adding project catena #281

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merged 8 commits into from
Jul 25, 2024
Merged

Adding project catena #281

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8fb1214
adding project catena
Mohinta2892 Jul 25, 2024
4603629
correct errors
Mohinta2892 Jul 25, 2024
5a3bb7c
style: changed lab -> Lab; auto-formatting
allison-truhlar Jul 25, 2024
2991411
remove use case tags
Mohinta2892 Jul 25, 2024
9ca6bbc
content: removed new tags
allison-truhlar Jul 25, 2024
12fce7f
chore: add new tags
allison-truhlar Jul 25, 2024
c020f10
chore: add new lab URLs
allison-truhlar Jul 25, 2024
d13a151
Merge branch 'main' of github.com:Mohinta2892/ossi-website into Mohin…
allison-truhlar Jul 25, 2024
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3 changes: 3 additions & 0 deletions .github/actions/validTagsList.json
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Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,9 @@
"development team": [
"Ahrens Lab",
"Branson Lab",
"Cardona Lab",
"Dudman Lab",
"Funke Lab",
"Pachitariu Lab",
"Preibisch Lab",
"Saalfeld Lab",
Expand All @@ -28,6 +30,7 @@
"Typescript"
],
"open source license": [
"APACHE",
"BSD-3 Clause",
"BSD-2 Clause",
"CC-by-0",
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18 changes: 11 additions & 7 deletions package-lock.json
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Binary file added public/proposals/catena.pdf
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12 changes: 11 additions & 1 deletion src/content/projects/_project-template.md
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Expand Up @@ -41,7 +41,9 @@ development team:
[
"Ahrens Lab",
"Branson Lab",
"Cardona Lab",
"Dudman Lab",
"Funke Lab",
"Pachitariu Lab",
"Preibisch Lab",
"Saalfeld Lab",
Expand All @@ -68,7 +70,15 @@ programming language:
"Typescript",
]
open source license:
["BSD-3 Clause", "BSD-2 Clause", "CC-by-0", "GPL-2.0", "GPL-3.0", "MIT"]
[
"APACHE",
"BSD-3 Clause",
"BSD-2 Clause",
"CC-by-0",
"GPL-2.0",
"GPL-3.0",
"MIT",
]
software type:
[
"Command line application",
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27 changes: 27 additions & 0 deletions src/content/projects/catena.md
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Original file line number Diff line number Diff line change
@@ -0,0 +1,27 @@
---
title: Catena
tagline: "Pipeline for automated connectome reconstruction from volume Electron Microscopy."
maintainer: Samia Mohinta
project type: [OSSI - current]
OSSI project status: [Active Development]
OSSI proposal link: ../../proposals/catena.pdf
github link: https://github.com/Mohinta2892/catena
documentation link: https://github.com/Mohinta2892/catena
installation instructions link: https://github.com/Mohinta2892/catena
preferred contact method: mailto:[email protected]
how to cite text: "Mohinta, S. (2022). Catena: Neuron Segmentation, Synapse Detection, Microtubule tracking and more... (Version 0.1) [Computer software]"
development team: ["Cardona Lab", "Funke Lab", "Scientific Computing Software"]
programming language: ["Python"]
open source license: ["APACHE"]
software type: ["Package"]
use case:
[
"Electron microscopy (EM)",
"Segmentation",
"Tool packaging/distribution",
"Visualization",
]
usage environment: ["HPC cluster", "Local installation"]
software ecosystem: ["CUDA", "Napari", "PyTorch", "Tensorflow"]
supported file types: ["HDF5", "N5", "TIFF", "ZARR"]
---
6 changes: 6 additions & 0 deletions src/data/labNamesUrls.js
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@@ -1,6 +1,12 @@
export const allLabNamesAndUrls = [
["Ahrens Lab", "https://www.janelia.org/lab/ahrens-lab"],
["Branson Lab", "https://www.janelia.org/lab/branson-lab"],
[
"Cardona Lab",
"https://www2.mrc-lmb.cam.ac.uk/group-leaders/a-to-g/albert-cardona/",
],
["Dudman Lab", "https://www.janelia.org/lab/dudman-lab"],
["Funke Lab", "https://www.janelia.org/lab/funke-lab"],
["Pachitariu Lab", "https://www.janelia.org/lab/pachitariu-lab"],
["Saalfeld Lab", "https://www.janelia.org/lab/saalfeld-lab"],
["Stringer Lab", "https://www.janelia.org/lab/stringer-lab"],
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