WIP: flit install fixups

InsightSoftwareConsortium · Nov 7, 2023 · c2f2fbf · c2f2fbf
1 parent 6a51ff1
commit c2f2fbf
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Showing 3 changed files with 14 additions and 2 deletions.
diff --git a/.github/workflows/test-notebooks.yml b/.github/workflows/test-notebooks.yml
@@ -13,6 +13,12 @@ jobs:
       with:
         python-version: "3.10"
 
+    - name: "Install Lightsheet Notebook Dependencies"
+      shell: bash
+      run: |
+        git clone https://github.com/AllenNeuralDynamics/aind-ccf-alignment-experiments.git
+        python -m pip install .
+
     - name: "Install Dependencies"
       shell: bash
       run: |

diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -18,7 +18,7 @@ jobs:
       run: |
         python -m pip install flit
         cd src
-        flit install --extras all
+        flit install --deps develop
 
     - name: "Run Tests"
       shell: bash

diff --git a/src/pyproject.toml b/src/pyproject.toml
@@ -40,6 +40,12 @@ dependencies = [
 Home = "https://github.com/InsightSoftwareConsortium/itk-dreg"
 
 [project.optional-dependencies]
+test = [
+    'itk-elastix',
+    'itk-ioomezarrngff',
+    'pytest',
+]
+
 dev = [
     'black',
     'pytest'
@@ -50,7 +56,7 @@ elastix = [
 ]
 
 lightsheet = [
-    'aind_ccf_alignment_experiments'
+    'aind_ccf_alignment_experiments',
     'itk-elastix',
     'itk-ioomezarrngff',
     'papermill'