Wip: Add CI workflows

InsightSoftwareConsortium · Nov 7, 2023 · 6a51ff1 · 6a51ff1
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diff --git a/.github/workflows/lint.yml b/.github/workflows/lint.yml
@@ -0,0 +1,21 @@
+name: 'lint'
+
+on:
+  [push, pull_request]
+
+jobs:
+  ruff-check:
+    name: "Lint with Ruff"
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3    
+    - uses: chartboost/ruff-action@v1
+      with:
+        src: "./src"
+
+  black-autoformat:
+    name: "Lint with Black"
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - uses: psf/black@stable
diff --git a/.github/workflows/test-notebooks.yml b/.github/workflows/test-notebooks.yml
@@ -0,0 +1,26 @@
+name: 'test'
+
+on:
+  [push, pull_request]
+
+jobs:
+  pytest:
+    name: "Test with PyTest"
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - uses: actions/setup-python@v4
+      with:
+        python-version: "3.10"
+
+    - name: "Install Dependencies"
+      shell: bash
+      run: |
+        python -m pip install flit
+        cd src
+        flit install --extras all
+
+    - name: "Run Tests"
+      shell: bash
+      run: |
+        pytest --nbmake --nbmake-timeout=30000 examples/*.ipynb
diff --git a/.github/workflows/test.yml b/.github/workflows/test.yml
@@ -0,0 +1,26 @@
+name: 'test'
+
+on:
+  [push, pull_request]
+
+jobs:
+  pytest:
+    name: "Test with PyTest"
+    runs-on: ubuntu-latest
+    steps:
+    - uses: actions/checkout@v3
+    - uses: actions/setup-python@v4
+      with:
+        python-version: "3.10"
+
+    - name: "Install Dependencies"
+      shell: bash
+      run: |
+        python -m pip install flit
+        cd src
+        flit install --extras all
+
+    - name: "Run Tests"
+      shell: bash
+      run: |
+        pytest ./src
diff --git a/example/ElastixDeformableRegistration.ipynb → examples/ElastixDeformableRegistration.ipynb b/example/ElastixDeformableRegistration.ipynb → examples/ElastixDeformableRegistration.ipynb
diff --git a/example/ElastixRegisterAndStitch.ipynb → examples/ElastixRegisterAndStitch.ipynb b/example/ElastixRegisterAndStitch.ipynb → examples/ElastixRegisterAndStitch.ipynb
diff --git a/example/LightsheetRegistration_draft.ipynb → examples/LightsheetRegistration_draft.ipynb b/example/LightsheetRegistration_draft.ipynb → examples/LightsheetRegistration_draft.ipynb
diff --git a/example/ScheduleTesting.ipynb → examples/ScheduleTesting.ipynb b/example/ScheduleTesting.ipynb → examples/ScheduleTesting.ipynb