-
-
Notifications
You must be signed in to change notification settings - Fork 264
New issue
Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.
By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.
Already on GitHub? Sign in to your account
Fix parsing error of h(p)*c wrappers #5060
Merged
Merged
Conversation
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
* Do not package debug builds * Do not try to upload with debug builds
* corrected Fortran docs for hyperslab selection * updated hyperslab op doc
Previously was hardcoding `-lzlib-static` which will result in the wrong linker flags when built with system zlib. It looks like there was logic to figure out the library name but the resulting `libname` was never used.
* Remove TRUE and FALSE from H5private.h * Replace hbool_t with bool in test code
__int64 raises warnings when building with clang
Ignores some of the older Autotools platform files, since the Autotools will be dropped in the next major release (and we don't have compilers on which to test, anyway). Also drops support for the old, non-compliant MSVC preprocessor.
The high-level GIF tools, h52gif and gif2h5, have unfixed CVE issues (with no proof-of-concept files). They are not critical tools, are not well maintained, and are an odd fit for building with the library. Because of this, they have been removed. We may move them to a separate repository in the future.
This is where most people will expect to find license information. The COPYING_LBNL_HDF5 file has also been renamed to LICENSE_LBNL_HDF5. The licenses are unchanged.
The CMake compiler checks skip checking for things like __attribute__() on Windows. Now that Visual Studio can use clang, we should be checking for this, even on non-MinGW Windows.
Solaris Studio hasn't been updated in almost a decade and the last version (12.4, circa 2015) doesn't seem to fully support C11. This PR removes some work-arounds for things like __attribute__() support.
These files are infrequently updated and generating them adds an annoying dependency on Perl. We're checking them in and will probably add a GitHub action to check if anything is stale when creating a PR. Adds: * H5Edefin.h * H5Einit.h * H5Emajdef.h * H5Emindef.h * H5Epubgen.h * H5Eterm.h * H5overflow.h * H5version.h
This was an unsupported build script to make building the library with CMake look like building it with the Autotools. It hasn't been maintained in a long time and we've had it marked as deprecated for years.
…p#4998) * Add warnings as errors workflow for cmake * Add spc par workflow * Add workflow call * Add parallel special
PR HDFGroup#4968 fixes a bug that causes the Julia CI to fail due to buggy HDF5 behavior. The Julia CI will need to be updated to properly test the fixed feature.
Also cleans up the links test, which had a ton of copy-and-pasted incorrect negative error checks (Calling TEST_ERROR within H5E_BEGIN_TRY / H5E_END_TRY pairs will goto out of the pair, leaving errors suppressed).
…ces (HDFGroup#4935) * Correct compile defs for zip_perf program
A recent bugfix to the library changed the return value of an API call and a Julia CI action expects the incorrect result. This patch papers over this until the upstream Julia wrapper CI can be fixed.
The H5Oexists issue has been fixed upstream
oss-fuzz occasionally complains about intermittent undefined behavior when when Boolean variables in H5C_cache_entry_t (like is_protected) are set to values other than 0 or 1 when parsing fuzzed files. Using calloc() to iniitialize the H5B_t struct (like other metadata already does) should fix this.
oss-fuzz often trips over unfreed datatype memory when parsing fuzzed files. This changes H5T__free() to use HDONE macros so cleanup continues on errors.
brtnfld
requested review from
derobins,
epourmal,
lrknox,
byrnHDF,
fortnern,
jhendersonHDF,
qkoziol,
vchoi-hdfgroup,
bmribler,
glennsong09 and
mattjala
as code owners
November 1, 2024 17:59
byrnHDF
approved these changes
Nov 1, 2024
lrknox
approved these changes
Nov 1, 2024
derobins
approved these changes
Nov 2, 2024
brtnfld
added a commit
to brtnfld/hdf5
that referenced
this pull request
Nov 4, 2024
Add quotes to correctly handle whitespace.
Sign up for free
to join this conversation on GitHub.
Already have an account?
Sign in to comment
Add this suggestion to a batch that can be applied as a single commit.
This suggestion is invalid because no changes were made to the code.
Suggestions cannot be applied while the pull request is closed.
Suggestions cannot be applied while viewing a subset of changes.
Only one suggestion per line can be applied in a batch.
Add this suggestion to a batch that can be applied as a single commit.
Applying suggestions on deleted lines is not supported.
You must change the existing code in this line in order to create a valid suggestion.
Outdated suggestions cannot be applied.
This suggestion has been applied or marked resolved.
Suggestions cannot be applied from pending reviews.
Suggestions cannot be applied on multi-line comments.
Suggestions cannot be applied while the pull request is queued to merge.
Suggestion cannot be applied right now. Please check back later.
Correctly handles whitespaces.