Normalization with develop (#704)

config/clang-cxxflags

@@ -113,19 +113,7 @@ if test "X-clang" = "X-$cxx_vendor" -o "X-Apple LLVM" = "X-$cxx_vendor"; then
             ;;
     esac
 
-    case "$host_os-$host_cpu" in
-        # cygwin needs the "-std=c99" flag removed, so make
-        # a specific case for Cygwin without the flag and a default
-        # case to add the flag everywhere else
-        cygwin-*)
-            ;;
-
-        *)
-            H5_CXXFLAGS="$H5_CXXFLAGS -std=c++11"
-            ;;
-    esac
-
-    H5_CXXFLAGS="$H5_CXXFLAGS $arch"
+    H5_CXXFLAGS="$H5_CXXFLAGS $arch -std=c++11"
 
     ##############
     # Production #

config/cmake/H5pubconf.h.in

@@ -198,9 +198,6 @@
    optimization operation */
 #cmakedefine H5_HAVE_INSTRUMENTED_LIBRARY @H5_HAVE_INSTRUMENTED_LIBRARY@
 
-/* Define to 1 if you have the <inttypes.h> header file. */
-#cmakedefine H5_HAVE_INTTYPES_H @H5_HAVE_INTTYPES_H@
-
 /* Define to 1 if you have the `ioctl' function. */
 #cmakedefine H5_HAVE_IOCTL @H5_HAVE_IOCTL@
 
@@ -346,18 +343,9 @@
 /* Define if `struct stat' has the `st_blocks' field */
 #cmakedefine H5_HAVE_STAT_ST_BLOCKS @H5_HAVE_STAT_ST_BLOCKS@
 
-/* Define to 1 if you have the <stdbool.h> header file. */
-#cmakedefine H5_HAVE_STDBOOL_H @H5_HAVE_STDBOOL_H@
-
 /* Define to 1 if you have the <stddef.h> header file. */
 #cmakedefine H5_HAVE_STDDEF_H @H5_HAVE_STDDEF_H@
 
-/* Define to 1 if you have the <stdint.h> header file. */
-#cmakedefine H5_HAVE_STDINT_H @H5_HAVE_STDINT_H@
-
-/* Define to 1 if you have the <stdint.h> header file for Cplusplus. */
-#cmakedefine H5_HAVE_STDINT_H_CXX @H5_HAVE_STDINT_H_CXX@
-
 /* Define to 1 if you have the <stdlib.h> header file. */
 #cmakedefine H5_HAVE_STDLIB_H @H5_HAVE_STDLIB_H@
 
@@ -704,9 +692,6 @@
 /* The size of `__int64', as computed by sizeof. */
 #define H5_SIZEOF___INT64 @H5_SIZEOF___INT64@
 
-/* Define to 1 if you have the ANSI C header files. */
-#cmakedefine H5_STDC_HEADERS @H5_STDC_HEADERS@
-
 /* Define if strict file format checks are enabled */
 #cmakedefine H5_STRICT_FORMAT_CHECKS @H5_STRICT_FORMAT_CHECKS@
 

config/cmake/HDFCXXCompilerFlags.cmake

@@ -9,7 +9,7 @@
 # If you do not have access to either file, you may request a copy from
 # [email protected].
 #
-set(CMAKE_CXX_STANDARD 98)
+set(CMAKE_CXX_STANDARD 11)
 set(CMAKE_CXX_STANDARD_REQUIRED TRUE)
 set(CMAKE_CXX_EXTENSIONS OFF)
 

config/cmake_ext_mod/ConfigureChecks.cmake

@@ -120,7 +120,6 @@ CHECK_INCLUDE_FILE_CONCAT ("features.h"      ${HDF_PREFIX}_HAVE_FEATURES_H)
 CHECK_INCLUDE_FILE_CONCAT ("dirent.h"        ${HDF_PREFIX}_HAVE_DIRENT_H)
 CHECK_INCLUDE_FILE_CONCAT ("setjmp.h"        ${HDF_PREFIX}_HAVE_SETJMP_H)
 CHECK_INCLUDE_FILE_CONCAT ("stddef.h"        ${HDF_PREFIX}_HAVE_STDDEF_H)
-CHECK_INCLUDE_FILE_CONCAT ("stdint.h"        ${HDF_PREFIX}_HAVE_STDINT_H)
 CHECK_INCLUDE_FILE_CONCAT ("unistd.h"        ${HDF_PREFIX}_HAVE_UNISTD_H)
 
 # Windows
@@ -146,12 +145,9 @@ CHECK_INCLUDE_FILE_CONCAT ("strings.h"       ${HDF_PREFIX}_HAVE_STRINGS_H)
 CHECK_INCLUDE_FILE_CONCAT ("stdlib.h"        ${HDF_PREFIX}_HAVE_STDLIB_H)
 CHECK_INCLUDE_FILE_CONCAT ("memory.h"        ${HDF_PREFIX}_HAVE_MEMORY_H)
 CHECK_INCLUDE_FILE_CONCAT ("dlfcn.h"         ${HDF_PREFIX}_HAVE_DLFCN_H)
-CHECK_INCLUDE_FILE_CONCAT ("inttypes.h"      ${HDF_PREFIX}_HAVE_INTTYPES_H)
 CHECK_INCLUDE_FILE_CONCAT ("netinet/in.h"    ${HDF_PREFIX}_HAVE_NETINET_IN_H)
 CHECK_INCLUDE_FILE_CONCAT ("netdb.h"         ${HDF_PREFIX}_HAVE_NETDB_H)
 CHECK_INCLUDE_FILE_CONCAT ("arpa/inet.h"     ${HDF_PREFIX}_HAVE_ARPA_INET_H)
-# _Bool type support
-CHECK_INCLUDE_FILE_CONCAT (stdbool.h    ${HDF_PREFIX}_HAVE_STDBOOL_H)
 
 ## Check for non-standard extenstion quadmath.h
 
@@ -237,11 +233,6 @@ macro (HDF_FUNCTION_TEST OTHER_TEST)
   endif ()
 endmacro ()
 
-#-----------------------------------------------------------------------------
-# Check for these functions before the time headers are checked
-#-----------------------------------------------------------------------------
-HDF_FUNCTION_TEST (STDC_HEADERS)
-
 #-----------------------------------------------------------------------------
 #  Check for large file support
 #-----------------------------------------------------------------------------
@@ -416,13 +407,9 @@ HDF_CHECK_TYPE_SIZE (time_t          ${HDF_PREFIX}_SIZEOF_TIME_T)
 # Extra C99 types
 #-----------------------------------------------------------------------------
 
-# _Bool type support
-if (HAVE_STDBOOL_H)
-  set (CMAKE_EXTRA_INCLUDE_FILES stdbool.h)
-  HDF_CHECK_TYPE_SIZE (bool         ${HDF_PREFIX}_SIZEOF_BOOL)
-else ()
-  HDF_CHECK_TYPE_SIZE (_Bool        ${HDF_PREFIX}_SIZEOF_BOOL)
-endif ()
+# Size of bool
+set (CMAKE_EXTRA_INCLUDE_FILES stdbool.h)
+HDF_CHECK_TYPE_SIZE (_Bool        ${HDF_PREFIX}_SIZEOF_BOOL)
 
 if (MINGW OR NOT WINDOWS)
   #-----------------------------------------------------------------------------
@@ -556,7 +543,6 @@ if (MINGW OR NOT WINDOWS)
   foreach (other_test
       HAVE_ATTRIBUTE
       HAVE_C99_FUNC
-#      STDC_HEADERS
       HAVE_FUNCTION
       HAVE_C99_DESIGNATED_INITIALIZER
       SYSTEM_SCOPE_THREADS

config/cmake_ext_mod/HDFTests.c

@@ -88,14 +88,6 @@ int main(void)
 }
 #endif
 
-#ifdef STDC_HEADERS
-#include <stdlib.h>
-#include <stdarg.h>
-#include <string.h>
-#include <float.h>
-int main() { return 0; }
-#endif /* STDC_HEADERS */
-
 
 #ifdef HAVE_ATTRIBUTE
 

config/cmake_ext_mod/HDFUseCXX.cmake

@@ -32,17 +32,6 @@ endif ()
 include (CheckIncludeFileCXX)
 include (TestForSTDNamespace)
 
-# IF the c compiler found stdint, check the C++ as well. On some systems this
-# file will be found by C but not C++, only do this test IF the C++ compiler
-# has been initialized (e.g. the project also includes some c++)
-if (${HDF_PREFIX}_HAVE_STDINT_H AND CMAKE_CXX_COMPILER_LOADED)
-  CHECK_INCLUDE_FILE_CXX ("stdint.h" ${HDF_PREFIX}_HAVE_STDINT_H_CXX)
-  if (NOT ${HDF_PREFIX}_HAVE_STDINT_H_CXX)
-    set (${HDF_PREFIX}_HAVE_STDINT_H "" CACHE INTERNAL "Have includes HAVE_STDINT_H")
-    set (USE_INCLUDES ${USE_INCLUDES} "stdint.h")
-  endif ()
-endif ()
-
 # For other CXX specific tests, use this MACRO.
 macro (HDF_CXX_FUNCTION_TEST OTHER_TEST)
   if (NOT DEFINED ${OTHER_TEST})

config/gnu-cxxflags

@@ -119,7 +119,7 @@ if test "X-g++" = "X-$cxx_vendor"; then
     esac
 
     # C++-specific
-    H5_CXXFLAGS="$H5_CXXFLAGS $arch"
+    H5_CXXFLAGS="$H5_CXXFLAGS $arch -std=c++11"
 
     ##############
     # Production #

configure.ac

@@ -1251,8 +1251,6 @@ AC_CHECK_HEADERS([sys/resource.h sys/time.h unistd.h sys/ioctl.h sys/stat.h])
 AC_CHECK_HEADERS([sys/socket.h sys/types.h sys/file.h])
 AC_CHECK_HEADERS([stddef.h setjmp.h features.h])
 AC_CHECK_HEADERS([dirent.h])
-AC_CHECK_HEADERS([stdint.h], [C9x=yes])
-AC_CHECK_HEADERS([stdbool.h])
 AC_CHECK_HEADERS([netdb.h netinet/in.h arpa/inet.h])
 
 ## Darwin
@@ -1417,11 +1415,7 @@ AC_CHECK_SIZEOF([off_t])
 
 if test "X$C9x" = "Xyes"; then
   cat >>confdefs.h <<\EOF
-#ifdef HAVE_STDBOOL_H
-#include <stdbool.h> /* for bool definition */
-#else
-#define bool _Bool
-#endif
+#include <stdbool.h>
 EOF
 AC_CHECK_SIZEOF([bool])
 fi
@@ -1932,10 +1926,8 @@ if test "x$HAVE_PTHREAD" = "xyes"; then
     AC_CACHE_VAL([hdf5_cv_system_scope_threads],
       [AC_RUN_IFELSE(
         [AC_LANG_PROGRAM([
-            #if STDC_HEADERS
             #include <stdlib.h>
             #include <pthread.h>
-            #endif
         ],[
               pthread_attr_t attribute;
               int ret;

release_docs/INSTALL

@@ -351,15 +351,18 @@ CONTENTS
         so it can be debugged with gdb, dbx, ddd, etc., or it can be
         compiled with various optimizations. To compile for symbolic
         debugging (the default for snapshots), say
-        `--enable-build-mode=production'; to compile with optimizations
+        `--enable-build-mode=debug'; to compile with optimizations
         (the default for supported public releases),
-        say `--enable-build-mode=production'. On some systems the
+        say `--enable-build-mode=production'. For a 'clean slate' configuration
+        with optimization disabled and nothing turned on,
+        say `--enable-build-mode=clean'. On some systems the
         library can also be compiled for profiling with gprof by saying
-        `--enable-production=profile'.
+        `--enable-profiling'.
 
             $ ./configure --enable-build-mode=debug       #symbolic debugging
             $ ./configure --enable-build-mode=production  #optimized code
-            $ ./configure --enable-production=profile     #for use with gprof
+            $ ./configure --enable-build-mode=clean       #'clean slate'
+            $ ./configure --enable-profiling              #for use with gprof
 
         Regardless of whether support for symbolic debugging is enabled,
         the library can also perform runtime debugging of certain packages
@@ -447,6 +450,19 @@ CONTENTS
 
             $ make -j -l6
 
+4.4. Building doxygen
+        One can optionally build the doxygen files for the HDF5 C library.
+        By default, this option is disabled. To build the html files, specify
+        '--enable-doxygen'.
+
+            $ ./configure --enable-doxygen
+
+        Configuration will halt if the required applications are not available.
+        To build:
+
+            $ make doxygen
+
+
 4.5. Testing
         HDF5 comes with various test suites, all of which can be run by
         specifying: