Much normalization with develop (#701)

* Brings CMake updates from develop

* Brings reduction in pedantic casts from develop

* Purges UFAIL from the library (#637)

* Committing clang-format changes

* Purges UFAIL from the library

* H5HL_insert change requested in PR

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Removes gratuitous (double)x.yF casts (#632)

* Committing clang-format changes

* Removes gratuitous (double)x.yF casts

* Committing clang-format changes

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Committing clang-format changes

* Cleans up a const warning left over from previous constification (#633)

* Committing clang-format changes

* Adds consts to a few global variables

* Cleans up a const warning left over from previous constification

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

* Formatted source

* Bring over some VOL registration changes

* VOL cleanup

* H5VL_request_status_t substitutions

* H5F.c cleanup

* Minor API tweaks from develop

* Moves H5G package init/teardown to H5Gint.c

* H5G cleanup

* H5M cleanup

* H5SM cleanup

* H5T cleanup

* H5R cleanup

* H5Lpublic.h cleanup

* H5L cleanup

* H5O cleanup

* H5A, H5CS, and H5AC cleanup

* Moved H5A init/teardown code to H5Aint.c

* Moves H5D I/O functions to H5D.c

* H5D cleanup

* Misc minor cleanup

* H5P close cleanup

* H5Tpublic.h cleanup

* Fixes err_compat test

* H5PLpublic.h cleanup

* Updates H5Ppublic.h

* H5Fpublic.h updates

* H5A.c cleanup

* Brings over H5Aexists and related changes

* Brings CMake shell testing changes from develop

* Close callback changes

* H5R and H5Tcommit normalization

* err_compat test works now

* H5O tweaks

* Updates VOL registration code

* Brings over H5VL_create_object

* H5Tconv.c reformatting

* H5T.c tweaks

* Brings datatype and reference updates from develop

* Brings VOL plugin loading changes from develop

* Brings event sets from develop

* Brings async functions over

* Tools changes

* Brings over many tools changes from develop

* Brings VOL flags from develop

* Fixes h5dump double/float tests

* Updates h5repack tests

* Brings h5diff test changes from develop

* Last h5dump changes

* Brings test changes from develop

* Committing clang-format changes

* Tidied h5_testing()

* Brings chunk iteration code + misc from develop

* Updates vds test

* Enables external link parallel test

* Brings updated property lists from develop

* H5G changes from develop

* H5MF cleanup

* Brings vfd_swmr test back into CMake

* Updates threadsafe test

* Updates plist test

* Brings recent changes from develop

Co-authored-by: github-actions <41898282+github-actions[bot]@users.noreply.github.com>

MANIFEST

@@ -743,6 +743,13 @@
 ./src/H5EAsblock.c
 ./src/H5EAstat.c
 ./src/H5EAtest.c
+./src/H5ES.c
+./src/H5ESevent.c
+./src/H5ESint.c
+./src/H5ESlist.c
+./src/H5ESmodule.h
+./src/H5ESpkg.h
+./src/H5ESprivate.h
 ./src/H5ESpublic.h
 ./src/H5F.c
 ./src/H5Faccum.c
@@ -1166,6 +1173,7 @@
 ./test/cache_tagging.c
 ./test/chunk_info.c
 ./test/cmpd_dset.c
+./test/cmpd_dtransform.c
 ./test/cork.c
 ./test/corrupt_stab_msg.h5
 ./test/cross_read.c
@@ -1184,6 +1192,7 @@
 ./test/enum.c
 ./test/err_compat.c
 ./test/error_test.c
+./test/event_set.c
 ./test/evict_on_close.c
 ./test/extend.c
 ./test/external.c
@@ -1218,9 +1227,9 @@
 ./test/freespace.c
 ./test/fsm_aggr_nopersist.h5
 ./test/fsm_aggr_persist.h5
+./test/gen_bad_compound.c
 ./test/gen_bad_offset.c
 ./test/gen_bad_ohdr.c
-./test/gen_bad_compound.c
 ./test/gen_bogus.c
 ./test/gen_bounds.c
 ./test/gen_cross.c
@@ -2055,6 +2064,9 @@
 ./tools/testfiles/tfill.ddl
 ./tools/testfiles/tfilters.h5
 ./tools/testfiles/tfletcher32.ddl
+./tools/testfiles/tfloatsattrs.ddl
+./tools/testfiles/tfloatsattrs.h5
+./tools/testfiles/tfloatsattrs.wddl
 ./tools/testfiles/tfvalues.h5
 ./tools/testfiles/tgroup-1.ddl
 ./tools/testfiles/tgroup-2.ddl
@@ -2092,7 +2104,10 @@
 ./tools/testfiles/tintsnodata.h5
 ./tools/testfiles/tlarge_objname.ddl
 ./tools/testfiles/tlarge_objname.h5
+./tools/testfiles/tldouble.ddl
 ./tools/testfiles/tldouble.h5
+./tools/testfiles/tldouble_scalar.ddl
+./tools/testfiles/tldouble_scalar.h5
 ./tools/testfiles/tlonglinks.ddl
 ./tools/testfiles/tlonglinks.h5
 ./tools/testfiles/tloop-1.ddl
@@ -2199,6 +2214,8 @@
 ./tools/testfiles/twithddl.exp
 ./tools/testfiles/twithddlfile.ddl
 ./tools/testfiles/twithddlfile.exp
+./tools/testfiles/tCVE_2018_11206_fill_old.h5
+./tools/testfiles/tCVE_2018_11206_fill_new.h5
 
 # h5dump test error files
 ./tools/test/h5dump/errfiles/filter_fail.err
@@ -2626,6 +2643,7 @@
 ./tools/test/h5diff/testfiles/h5diff_80.txt
 ./tools/test/h5diff/testfiles/h5diff_800.txt
 ./tools/test/h5diff/testfiles/h5diff_801.txt
+./tools/test/h5diff/testfiles/h5diff_830.txt
 ./tools/test/h5diff/testfiles/h5diff_90.txt
 ./tools/test/h5diff/testfiles/h5diff_100.txt
 ./tools/test/h5diff/testfiles/h5diff_101.txt
@@ -2796,6 +2814,7 @@
 #test files for h5repack
 ./tools/test/h5repack/testfiles/README
 ./tools/test/h5repack/testfiles/bounds_latest_latest.h5
+./tools/test/h5repack/testfiles/h5copy_extlinks_src.h5
 ./tools/test/h5repack/testfiles/h5repack_aggr.h5
 ./tools/test/h5repack/testfiles/h5repack_attr.h5
 ./tools/test/h5repack/testfiles/h5repack_attr_refs.h5
@@ -2861,6 +2880,8 @@
 ./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_test.ddl
 ./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_version_test.ddl
 ./tools/test/h5repack/testfiles/h5repack_layout.h5-plugin_zero.ddl
+./tools/test/h5repack/testfiles/h5repack_CVE-2018-17432.h5
+./tools/test/h5repack/testfiles/h5repack_CVE-2018-14460.h5
 ./tools/test/h5repack/testfiles/GS.h5repack_paged_nopersist.h5.ddl
 ./tools/test/h5repack/testfiles/S.h5repack_fsm_aggr_persist.h5.ddl
 ./tools/test/h5repack/testfiles/SP.h5repack_fsm_aggr_nopersist.h5.ddl
@@ -2874,6 +2895,31 @@
 ./tools/test/h5repack/testfiles/4_vds.h5-vds_compa-v.ddl
 ./tools/test/h5repack/testfiles/attrregion.tattrreg.h5.ddl
 ./tools/test/h5repack/testfiles/dataregion.tdatareg.h5.ddl
+./tools/test/h5repack/testfiles/textlink-base.textlink.h5.ddl
+./tools/test/h5repack/testfiles/textlink-merge.textlink.h5.tst
+./tools/test/h5repack/testfiles/textlink-mergeprune.textlink.h5.ddl
+./tools/test/h5repack/testfiles/textlink-prune.textlink.h5.ddl
+./tools/test/h5repack/testfiles/textlinkfar-base.textlinkfar.h5.ddl
+./tools/test/h5repack/testfiles/textlinkfar-merge.textlinkfar.h5.tst
+./tools/test/h5repack/testfiles/textlinkfar-mergeprune.textlinkfar.h5.ddl
+./tools/test/h5repack/testfiles/textlinkfar-prune.textlinkfar.h5.ddl
+./tools/test/h5repack/testfiles/textlinksrc-base.textlinksrc.h5.ddl
+./tools/test/h5repack/testfiles/textlinksrc-merge.textlinksrc.h5.tst
+./tools/test/h5repack/testfiles/textlinksrc-mergeprune.textlinksrc.h5.ddl
+./tools/test/h5repack/testfiles/textlinksrc-prune.textlinksrc.h5.ddl
+./tools/test/h5repack/testfiles/textlinktar-base.textlinktar.h5.ddl
+./tools/test/h5repack/testfiles/textlinktar-merge.textlinktar.h5.tst
+./tools/test/h5repack/testfiles/textlinktar-mergeprune.textlinktar.h5.ddl
+./tools/test/h5repack/testfiles/textlinktar-prune.textlinktar.h5.ddl
+./tools/test/h5repack/testfiles/tsoftlinks-base.tsoftlinks.h5.ddl
+./tools/test/h5repack/testfiles/tsoftlinks-merge.tsoftlinks.h5.tst
+./tools/test/h5repack/testfiles/tsoftlinks-mergeprune.tsoftlinks.h5.ddl
+./tools/test/h5repack/testfiles/tsoftlinks-prune.tsoftlinks.h5.ddl
+./tools/test/h5repack/testfiles/h5copy_extlinks_src-base.h5copy_extlinks_src.h5.ddl
+./tools/test/h5repack/testfiles/h5copy_extlinks_src-merge.h5copy_extlinks_src.h5.tst
+./tools/test/h5repack/testfiles/h5copy_extlinks_src-mergeprune.h5copy_extlinks_src.h5.ddl
+./tools/test/h5repack/testfiles/h5copy_extlinks_src-prune.h5copy_extlinks_src.h5.ddl
+./tools/test/h5repack/testfiles/h5copy_extlinks_trg.h5
 
 # jam utility and tests
 ./tools/src/h5jam/Makefile.am

bin/trace

@@ -53,6 +53,7 @@ $Source = "";
                "H5D_scatter_func_t"         => "DS",
                "H5FD_mpio_xfer_t"           => "Dt",
                "H5D_vds_view_t"             => "Dv",
+               "H5D_chunk_iter_op_t"        => "x",
                "herr_t"                     => "e",
                "H5E_auto1_t"                => "Ea",
                "H5E_auto2_t"                => "EA",

c++/src/CMakeLists.txt

@@ -199,11 +199,11 @@ set (_PKG_CONFIG_REQUIRES_PRIVATE "${HDF5_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}"
 
 configure_file (
     ${HDF_CONFIG_DIR}/libhdf5.pc.in
-    ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_CPP_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
+    ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_CPP_LIB_CORENAME}.pc
     @ONLY
 )
 install (
-    FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_CPP_LIB_CORENAME}-${HDF5_PACKAGE_VERSION}.pc
+    FILES ${HDF5_BINARY_DIR}/CMakeFiles/${HDF5_CPP_LIB_CORENAME}.pc
     DESTINATION ${HDF5_INSTALL_LIB_DIR}/pkgconfig
     COMPONENT cpplibraries
 )