3.5.0

List of changes from version 3.4.0 to 3.5.0 (until Sep 24th, 2022)

 - automatic testcases (short regression test) and long-running performance tests
 - added singularity definition file and instructions
 - fix of PP::ProfileReadError that occurred with new versions of libstdc++
 - fixed an issue with chromosomes that are larger than 2^31 bp (~2GB)
 - bugfixes in augustus, augustify and for BRAKER
 - common parameter definitions of pygustus and augustus
 - new species Vitis vinfera, Berviolum minutum, Hydra vulgaris, Skeletonema costatum, Pediculus humanus,
   Pycnopodia helianthoides, Dermasterias imbricata, Ricinus communis, Taeniopygia guttata, Branchiostoma floridae,
   Anopheles gambiae, Cryptosporidium hominis, Physcomitrium patens, Perkinsus marinus, Loa loa, Trypanosoma cruzi,
   Naegleria gruberi, Monosiga brevicollis, Cyclotella cryptica, Sclerotinia sclerotiorum, Paramecium tetraurelia,
   Xenopus tropicalis, Notospermus geniculatus, Chrysaora chesapeakei, sunflower
 - improved filterBam performance
 - make SeqLib API an alternative to the Bamtools API
 - improvements in augustify

New Contributors

• @nathanweeks made their first contribution in #235
• @smoe made their first contribution in #239
• @diekhans made their first contribution in #250
• @sestaton made their first contribution in #251
• @OnlineArts made their first contribution in #256
• @Gullumluvl made their first contribution in #265
• @paulmenzel made their first contribution in #271
• @prehensilecode made their first contribution in #321
• @douglasgscofield made their first contribution in #325

Full Changelog: v3.4.0...v3.5.0