Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

docker image missing perl libraries #169

Closed
JWDebler opened this issue Jul 20, 2020 · 2 comments · Fixed by #235
Closed

docker image missing perl libraries #169

JWDebler opened this issue Jul 20, 2020 · 2 comments · Fixed by #235
Assignees
@MarioStanke

Comments

@JWDebler
Copy link

Hi,
I just noticed that aa2nonred.pl in the docker image (/root/augustus/scripts/aa2nonred.pl) crashes due to missing perl libraries:

Can't locate File/Which.pm in @INC (you may need to install the File::Which module) (@INC contains: /etc/perl /usr/local/lib/x86_64-linux-gnu/perl/5.26.1 /usr/local/share/perl/5.26.1 /usr/lib/x86_64-linux-gnu/perl5/5.26 /usr/share/perl5 /usr/lib/x86_64-linux-gnu/perl/5.26 /usr/share/perl/5.26 /usr/local/lib/site_perl /usr/lib/x86_64-linux-gnu/perl-base) at scripts/aa2nonred.pl line 18.  
BEGIN failed--compilation aborted at scripts/aa2nonred.pl line 18.
@JWDebler
Copy link
Author

as well as Parallel::ForkManager

JWDebler added a commit to JWDebler/Augustus that referenced this issue Jul 20, 2020
@JWDebler
missing Perl modules
5ea282d 
This fixes [Issue Gaius-Augustus#169](Gaius-Augustus#169)
@MarioStanke
Copy link
Contributor

Thanks. Will fix in a while.

@MarioStanke MarioStanke self-assigned this Jul 20, 2020
@nathanweeks nathanweeks mentioned this issue Dec 11, 2020
Merged
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@MarioStanke MarioStanke

Labels
None yet
Projects
None yet
Milestone
No milestone
Development

Successfully merging a pull request may close this issue.

Dockerfile dependency updates for scripts harvardinformatics/Augustus
2 participants
@JWDebler @MarioStanke