Work in progress adding APNI cultivar name lookup to implementation of …

…tdwg/bdq#70 VALIDATION_TAXON_UNAMBIGUOUS

src/main/java/org/filteredpush/qc/sciname/DwCSciNameDQ.java

@@ -36,6 +36,7 @@
 import org.datakurator.ffdq.annotations.*;
 import org.datakurator.ffdq.api.DQResponse;
 import org.datakurator.ffdq.model.ResultState;
+import org.filteredpush.qc.sciname.services.APNIService;
 import org.filteredpush.qc.sciname.services.GBIFService;
 import org.filteredpush.qc.sciname.services.IRMNGService;
 import org.filteredpush.qc.sciname.services.ServiceException;
@@ -978,6 +979,8 @@ public static DQResponse<ComplianceValue> validationTaxonUnambiguous(
         					matchList = WoRMSService.lookupTaxon(lookMeUp, taxon.getScientificNameAuthorship());
         				} else if (sourceAuthority.getAuthority().equals(EnumSciNameSourceAuthority.IRMNG)) {
         					matchList = IRMNGService.lookupTaxon(lookMeUp, taxon.getScientificNameAuthorship());        						
+        				} else if (sourceAuthority.getAuthority().equals(EnumSciNameSourceAuthority.ANSL_APNI)) {
+        					matchList = APNIService.lookupTaxon(lookMeUp, taxon.getScientificNameAuthorship());        						
         				} else { 
         					throw new UnsupportedSourceAuthorityException("Source Authority Not Implemented");
         				} 

src/main/java/org/filteredpush/qc/sciname/EnumSciNameSourceAuthority.java

@@ -36,6 +36,7 @@ public enum EnumSciNameSourceAuthority {
     GBIF_ARBITRARY,
     WORMS,
     IRMNG,
+    ANSL_APNI, 
     INVALID;
 
 	/**

src/main/java/org/filteredpush/qc/sciname/SciNameSourceAuthority.java

@@ -88,6 +88,10 @@ public SciNameSourceAuthority(String authorityString) throws SourceAuthorityExce
 	    	this.authority = EnumSciNameSourceAuthority.IRMNG;	
 	    } else if (authorityString.toUpperCase().equals("IRMNG")) {
 	    	this.authority = EnumSciNameSourceAuthority.IRMNG;	
+	    } else if (authorityString.toUpperCase().equals("https://api.biodiversity.org.au/name/check?dataset=APNI".toUpperCase())) {
+	    	this.authority = EnumSciNameSourceAuthority.ANSL_APNI;	
+	    } else if (authorityString.toUpperCase().equals("APNI")) {
+	    	this.authority = EnumSciNameSourceAuthority.ANSL_APNI;	
 	    } else if (authorityString.toUpperCase().equals(EnumSciNameSourceAuthority.GBIF_BACKBONE_TAXONOMY.getName())) {
 	    	this.authority = EnumSciNameSourceAuthority.GBIF_BACKBONE_TAXONOMY;
 	    } else if (authorityString.toUpperCase().equals(EnumSciNameSourceAuthority.GBIF_COL.getName())) {

src/main/java/org/filteredpush/qc/sciname/SciNameUtils.java

@@ -34,6 +34,7 @@
 import org.apache.commons.cli.ParseException;
 import org.apache.commons.logging.Log;
 import org.apache.commons.logging.LogFactory;
+import org.filteredpush.qc.sciname.services.APNIService;
 import org.filteredpush.qc.sciname.services.GBIFService;
 import org.filteredpush.qc.sciname.services.GNIService;
 import org.filteredpush.qc.sciname.services.IRMNGService;
@@ -214,6 +215,14 @@ public static boolean validateTaxonID(String taxonID, SciNameSourceAuthority sou
 				logger.debug(match.getScientificName());
 				result=true;
 			}
+		} else if (sourceAuthority.getAuthority().equals(EnumSciNameSourceAuthority.ANSL_APNI)) {
+			// TODO implement
+			String id = taxonID.replace("https://id.biodiversity.org.au/name/apni/", "");
+			NameUsage match = APNIService.lookupTaxonByID(id);
+			if (match!=null) { 
+				logger.debug(match.getScientificName());
+				result=true;
+			}
 		} else { 
 			throw new UnsupportedSourceAuthorityException("Source Authority Not Implemented");
 		} 

src/main/java/org/filteredpush/qc/sciname/services/APNIService.java

@@ -0,0 +1,56 @@
+/** 
+ * APNIService.java
+ * 
+ * Copyright 2024 President and Fellows of Harvard College
+ *
+ * Licensed under the Apache License, Version 2.0 (the "License");
+ * you may not use this file except in compliance with the License.
+ * You may obtain a copy of the License at
+ *
+ *     http://www.apache.org/licenses/LICENSE-2.0
+ *
+ * Unless required by applicable law or agreed to in writing, software
+ * distributed under the License is distributed on an "AS IS" BASIS,
+ * WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+ * See the License for the specific language governing permissions and
+ * limitations under the License.
+ */
+package org.filteredpush.qc.sciname.services;
+
+import java.util.ArrayList;
+import java.util.List;
+
+import org.apache.commons.logging.Log;
+import org.apache.commons.logging.LogFactory;
+import org.filteredpush.qc.sciname.IDFormatException;
+import org.irmng.aphia.v1_0.handler.ApiException;
+
+import edu.harvard.mcz.nametools.NameUsage;
+
+/**
+ * @author mole
+ *
+ */
+public class APNIService {
+
+	private static final Log logger = LogFactory.getLog(APNIService.class);
+
+	private static String endpoint = "https://api.biodiversity.org.au/name/check?dataset=APNI";
+
+	public static NameUsage lookupTaxonByID(String apniID) throws IDFormatException, ApiException { 
+		NameUsage result = new NameUsage();
+		// TODO: Implement
+		// https://id.biodiversity.org.au/name/apni/100473
+
+		return result;
+	}
+
+	public static  List<NameUsage> lookupTaxon(String taxon,  String authorship) throws ApiException { 
+		List<NameUsage> result  = new ArrayList<NameUsage>();
+		// TODO: Implement
+		// https://api.biodiversity.org.au/name/check?dataset=APNI&q=Solanum%20centrale%20%E2%80%98Desert%20tang%E2%80%99
+
+		return result;
+
+	}
+}