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Improve case.setup clean (happens for --clean or --reset) #3449

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merged 1 commit into from
Mar 12, 2020

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jgfouca
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@jgfouca jgfouca commented Mar 12, 2020

Need to remove Macro files, otherwise the setup does not re-run
the BuildTools.configure.

Test suite: scripts_regression_tests
Test baseline:
Test namelist changes:
Test status: [bit for bit, roundoff, climate changing]

Fixes [CIME Github issue #]

User interface changes?:

Update gh-pages html (Y/N)?:

Code review: @jedwards4b

Need to remove Macro files, otherwise the setup does not re-run
the BuildTools.configure.
@jedwards4b
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I actually prefer this feature as is and use it to test new compiler options by editing the Macros file directly. Can we just document the need to remove this file if you want to regenerate it? Or maybe have a ./case.setup --reset-full option?

@jgfouca
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jgfouca commented Mar 12, 2020

You could still edit Macros, right? You'd just have to not do a case.setup --clean in order to not lose them.

@jgfouca jgfouca merged commit 3444503 into master Mar 12, 2020
@jgfouca jgfouca deleted the jgfouca/improve_case_setup_clean branch March 12, 2020 23:32
ekluzek added a commit to ekluzek/cime that referenced this pull request Mar 20, 2020
Tagging cime5.8.17

Originator: Bill Sacks
Date: 3-15-2020
Tag: cime5.8.17
Answer Changes: None
Tests: scripts_regression_tests, aux_clm
Dependencies: none

Brief Summary:
    - Separate mct and nuopc data, xcpl and stub components
    - Update pio2
    - Documentation: provide a version dropdown menu and change theme
    - Add ne5pg2_ne5pg2_mg37 grid
    - Fix some issues

User interface changes: None

PR summary: git log --oneline --first-parent [previous_tag]..master
4f18807 Merge pull request ESMCI#3439 from billsacks/versioned_docs3
38c2b9f Merge pull request ESMCI#3441 from jedwards4b/thunder_port
5d9ff80 Merge pull request ESMCI#3451 from jedwards4b/check_inputdata_fix
3444503 Merge pull request ESMCI#3449 from ESMCI/jgfouca/improve_case_setup_clean
02a8eeb fix default for PIO_REARRANGER
49e82c6 Merge pull request ESMCI#3447 from jedwards4b/pio2_update
ada1f09 Merge pull request ESMCI#3445 from ESMCI/fischer/ne5pg2
bbba1af Merge pull request ESMCI#3444 from alperaltuntas/datm_mesh_tol
acc2d23 Merge commit 'e5265f03a6a8e1806e1b463b00c006b365e149d4'
fadc3ee resolve conflicts
614b311 Merge pull request ESMCI#3440 from ESMCI/fischer/aq_scam
328e387 Merge pull request ESMCI#3392 from ESMCI/mvertens/new_component_directories3
a93ced5 need to explicitly state compiler used
bf09ad8 minor change to get FFLAGS
20856d8 Merge pull request ESMCI#3431 from jedwards4b/complete_cprnc_fix
7fd3dae Merge pull request ESMCI#3430 from ESMCI/jgfouca/sharedlib_bld_serialization
e75142f Merge pull request ESMCI#3424 from ESMCI/cprnc_build_machine

Modified files: git diff --name-status [previous_tag]
M	config/cesm/config_files.xml
M	config/cesm/config_grids.xml
M	config/cesm/machines/config_batch.xml
M	config/cesm/machines/config_compilers.xml
M	config/cesm/machines/config_machines.xml
M	config/cesm/machines/config_pio.xml
M	config/e3sm/config_files.xml
M	config/ufs/config_files.xml
M	config/ufs/config_inputdata.xml
M	config/ufs/machines/config_batch.xml
M	config/ufs/machines/config_compilers.xml
M	config/ufs/machines/config_machines.xml
M	config/ufs/machines/config_workflow.xml
M	config/ufs/machines/template.chgres.run
M	config/ufs/machines/template.gfs_post.run
M	doc/README
D	doc/source/_static
A	doc/source/_static/pop_ver.js
A	doc/source/_templates/footer.html
A	doc/source/_templates/layout.html
M	doc/source/conf.py
M	scripts/lib/CIME/SystemTests/pre.py
M	scripts/lib/CIME/XML/env_batch.py
M	scripts/lib/CIME/build.py
M	scripts/lib/CIME/buildlib.py
M	scripts/lib/CIME/case/case_setup.py
M	scripts/lib/CIME/case/check_input_data.py
M	scripts/lib/CIME/case/preview_namelists.py
M	scripts/lib/CIME/hist_utils.py
M	scripts/lib/CIME/test_scheduler.py
M	scripts/tests/CMakeLists.txt
M	scripts/tests/scripts_regression_tests.py
M	src/build_scripts/buildlib.cprnc
D	src/components/data_comps/datm/doc/bookinfo.xml
D	src/components/data_comps/datm/doc/datacomps.xml
D	src/components/data_comps/datm/doc/intro.xml
D	src/components/data_comps/datm/doc/rundocbook.csh
D	src/components/data_comps/datm/doc/streams.xml
D	src/components/data_comps/datm/doc/ug.xml
D	src/components/data_comps/docn/tools/pop_som_frc/SOM.pdf
D	src/components/data_comps/dwav/bld/README
R100	src/components/data_comps/datm/cime_config/buildlib	src/components/data_comps_mct/datm/cime_config/buildlib
R100	src/components/data_comps/datm/cime_config/buildnml	src/components/data_comps_mct/datm/cime_config/buildnml
R100	src/components/data_comps/datm/cime_config/config_archive.xml	src/components/data_comps_mct/datm/cime_config/config_archive.xml
R100	src/components/data_comps/datm/cime_config/config_component.xml	src/components/data_comps_mct/datm/cime_config/config_component.xml
R100	src/components/data_comps/datm/cime_config/namelist_definition_datm.xml	src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
R100	src/components/data_comps/datm/cime_config/user_nl_datm	src/components/data_comps_mct/datm/cime_config/user_nl_datm
R100	src/components/data_comps/datm/mct/atm_comp_mct.F90	src/components/data_comps_mct/datm/src/atm_comp_mct.F90
R100	src/components/data_comps/datm/mct/datm_comp_mod.F90	src/components/data_comps_mct/datm/src/datm_comp_mod.F90
R100	src/components/data_comps/datm/mct/datm_shr_mod.F90	src/components/data_comps_mct/datm/src/datm_shr_mod.F90
R100	src/components/data_comps/desp/cime_config/buildlib	src/components/data_comps_mct/desp/cime_config/buildlib
R099	src/components/data_comps/desp/cime_config/buildnml	src/components/data_comps_mct/desp/cime_config/buildnml
R100	src/components/data_comps/desp/cime_config/config_component.xml	src/components/data_comps_mct/desp/cime_config/config_component.xml
R100	src/components/data_comps/desp/cime_config/namelist_definition_desp.xml	src/components/data_comps_mct/desp/cime_config/namelist_definition_desp.xml
R100	src/components/data_comps/desp/cime_config/user_nl_desp	src/components/data_comps_mct/desp/cime_config/user_nl_desp
R100	src/components/data_comps/desp/desp_comp_mod.F90	src/components/data_comps_mct/desp/desp_comp_mod.F90
R100	src/components/data_comps/desp/esp_utils.F90	src/components/data_comps_mct/desp/esp_utils.F90
R100	src/components/data_comps/desp/mct/esp_comp_mct.F90	src/components/data_comps_mct/desp/src/esp_comp_mct.F90
R100	src/components/data_comps/dice/cime_config/buildlib	src/components/data_comps_mct/dice/cime_config/buildlib
R100	src/components/data_comps/dice/cime_config/buildnml	src/components/data_comps_mct/dice/cime_config/buildnml
R100	src/components/data_comps/dice/cime_config/config_archive.xml	src/components/data_comps_mct/dice/cime_config/config_archive.xml
R100	src/components/data_comps/dice/cime_config/config_component.xml	src/components/data_comps_mct/dice/cime_config/config_component.xml
R100	src/components/data_comps/dice/cime_config/namelist_definition_dice.xml	src/components/data_comps_mct/dice/cime_config/namelist_definition_dice.xml
R100	src/components/data_comps/dice/cime_config/user_nl_dice	src/components/data_comps_mct/dice/cime_config/user_nl_dice
R100	src/components/data_comps/dice/mct/dice_comp_mod.F90	src/components/data_comps_mct/dice/src/dice_comp_mod.F90
R100	src/components/data_comps/dice/mct/dice_flux_atmice_mod.F90	src/components/data_comps_mct/dice/src/dice_flux_atmice_mod.F90
R100	src/components/data_comps/dice/mct/dice_shr_mod.F90	src/components/data_comps_mct/dice/src/dice_shr_mod.F90
R100	src/components/data_comps/dice/mct/ice_comp_mct.F90	src/components/data_comps_mct/dice/src/ice_comp_mct.F90
R100	src/components/data_comps/dlnd/cime_config/buildlib	src/components/data_comps_mct/dlnd/cime_config/buildlib
R100	src/components/data_comps/dlnd/cime_config/buildnml	src/components/data_comps_mct/dlnd/cime_config/buildnml
R100	src/components/data_comps/dlnd/cime_config/config_archive.xml	src/components/data_comps_mct/dlnd/cime_config/config_archive.xml
R100	src/components/data_comps/dlnd/cime_config/config_component.xml	src/components/data_comps_mct/dlnd/cime_config/config_component.xml
R100	src/components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml	src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
R100	src/components/data_comps/dlnd/cime_config/user_nl_dlnd	src/components/data_comps_mct/dlnd/cime_config/user_nl_dlnd
R100	src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90	src/components/data_comps_mct/dlnd/src/dlnd_comp_mod.F90
R100	src/components/data_comps/dlnd/mct/dlnd_shr_mod.F90	src/components/data_comps_mct/dlnd/src/dlnd_shr_mod.F90
R100	src/components/data_comps/dlnd/mct/lnd_comp_mct.F90	src/components/data_comps_mct/dlnd/src/lnd_comp_mct.F90
R100	src/components/data_comps/docn/cime_config/buildlib	src/components/data_comps_mct/docn/cime_config/buildlib
R100	src/components/data_comps/docn/cime_config/buildnml	src/components/data_comps_mct/docn/cime_config/buildnml
R100	src/components/data_comps/docn/cime_config/config_archive.xml	src/components/data_comps_mct/docn/cime_config/config_archive.xml
R100	src/components/data_comps/docn/cime_config/config_component.xml	src/components/data_comps_mct/docn/cime_config/config_component.xml
R100	src/components/data_comps/docn/cime_config/namelist_definition_docn.xml	src/components/data_comps_mct/docn/cime_config/namelist_definition_docn.xml
R100	src/components/data_comps/docn/cime_config/user_nl_docn	src/components/data_comps_mct/docn/cime_config/user_nl_docn
R099	src/components/data_comps/docn/mct/docn_comp_mod.F90	src/components/data_comps_mct/docn/src/docn_comp_mod.F90
R100	src/components/data_comps/docn/mct/docn_shr_mod.F90	src/components/data_comps_mct/docn/src/docn_shr_mod.F90
R100	src/components/data_comps/docn/mct/ocn_comp_mct.F90	src/components/data_comps_mct/docn/src/ocn_comp_mct.F90
R100	src/components/data_comps/docn/tools/pop_som_frc/README	src/components/data_comps_mct/docn/tools/pop_som_frc/README
R100	src/components/data_comps/docn/tools/pop_som_frc/SOM.doc	src/components/data_comps_mct/docn/tools/pop_som_frc/SOM.doc
R100	src/components/data_comps/datm/doc/SOM.pdf	src/components/data_comps_mct/docn/tools/pop_som_frc/SOM.pdf
R100	src/components/data_comps/docn/tools/pop_som_frc/pop_frc.csh	src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc.csh
R100	src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlann.ncl	src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc_mlann.ncl
R100	src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlt.ncl	src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc_mlt.ncl
R100	src/components/data_comps/docn/tools/pop_som_frc/pop_interp.ncl	src/components/data_comps_mct/docn/tools/pop_som_frc/pop_interp.ncl
R100	src/components/data_comps/docn/tools/pop_som_frc/read_from_mss.csh	src/components/data_comps_mct/docn/tools/pop_som_frc/read_from_mss.csh
R100	src/components/data_comps/docn/tools/pop_som_frc/read_from_mss_month.csh	src/components/data_comps_mct/docn/tools/pop_som_frc/read_from_mss_month.csh
R100	src/components/data_comps/drof/cime_config/buildlib	src/components/data_comps_mct/drof/cime_config/buildlib
R100	src/components/data_comps/drof/cime_config/buildnml	src/components/data_comps_mct/drof/cime_config/buildnml
R100	src/components/data_comps/drof/cime_config/config_archive.xml	src/components/data_comps_mct/drof/cime_config/config_archive.xml
R100	src/components/data_comps/drof/cime_config/config_component.xml	src/components/data_comps_mct/drof/cime_config/config_component.xml
R100	src/components/data_comps/drof/cime_config/namelist_definition_drof.xml	src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
R100	src/components/data_comps/drof/cime_config/user_nl_drof	src/components/data_comps_mct/drof/cime_config/user_nl_drof
R100	src/components/data_comps/drof/mct/drof_comp_mod.F90	src/components/data_comps_mct/drof/src/drof_comp_mod.F90
R100	src/components/data_comps/drof/mct/drof_shr_mod.F90	src/components/data_comps_mct/drof/src/drof_shr_mod.F90
R100	src/components/data_comps/drof/mct/rof_comp_mct.F90	src/components/data_comps_mct/drof/src/rof_comp_mct.F90
R100	src/components/data_comps/dwav/README	src/components/data_comps_mct/dwav/README
R100	src/components/data_comps/dwav/cime_config/buildlib	src/components/data_comps_mct/dwav/cime_config/buildlib
R100	src/components/data_comps/dwav/cime_config/buildnml	src/components/data_comps_mct/dwav/cime_config/buildnml
R100	src/components/data_comps/dwav/cime_config/config_archive.xml	src/components/data_comps_mct/dwav/cime_config/config_archive.xml
R100	src/components/data_comps/dwav/cime_config/config_component.xml	src/components/data_comps_mct/dwav/cime_config/config_component.xml
R100	src/components/data_comps/dwav/cime_config/namelist_definition_dwav.xml	src/components/data_comps_mct/dwav/cime_config/namelist_definition_dwav.xml
R100	src/components/data_comps/dwav/cime_config/user_nl_dwav	src/components/data_comps_mct/dwav/cime_config/user_nl_dwav
R100	src/components/data_comps/dwav/mct/dwav_comp_mod.F90	src/components/data_comps_mct/dwav/src/dwav_comp_mod.F90
R100	src/components/data_comps/dwav/mct/dwav_shr_mod.F90	src/components/data_comps_mct/dwav/src/dwav_shr_mod.F90
R100	src/components/data_comps/dwav/mct/wav_comp_mct.F90	src/components/data_comps_mct/dwav/src/wav_comp_mct.F90
R100	src/components/stub_comps/satm/cime_config/buildlib	src/components/data_comps_nuopc/datm/cime_config/buildlib
A	src/components/data_comps_nuopc/datm/cime_config/buildnml
A	src/components/data_comps_nuopc/datm/cime_config/config_archive.xml
A	src/components/data_comps_nuopc/datm/cime_config/config_component.xml
A	src/components/data_comps_nuopc/datm/cime_config/namelist_definition_datm.xml
A	src/components/data_comps_nuopc/datm/cime_config/user_nl_datm
R099	src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90	src/components/data_comps_nuopc/datm/src/atm_comp_nuopc.F90
R099	src/components/data_comps/datm/nuopc/datm_comp_mod.F90	src/components/data_comps_nuopc/datm/src/datm_comp_mod.F90
R100	src/components/stub_comps/sesp/cime_config/buildlib	src/components/data_comps_nuopc/dice/cime_config/buildlib
A	src/components/data_comps_nuopc/dice/cime_config/buildnml
A	src/components/data_comps_nuopc/dice/cime_config/config_archive.xml
A	src/components/data_comps_nuopc/dice/cime_config/config_component.xml
A	src/components/data_comps_nuopc/dice/cime_config/namelist_definition_dice.xml
A	src/components/data_comps_nuopc/dice/cime_config/user_nl_dice
R097	src/components/data_comps/dice/nuopc/dice_comp_mod.F90	src/components/data_comps_nuopc/dice/src/dice_comp_mod.F90
R100	src/components/data_comps/dice/nuopc/dice_flux_atmice_mod.F90	src/components/data_comps_nuopc/dice/src/dice_flux_atmice_mod.F90
R099	src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90	src/components/data_comps_nuopc/dice/src/ice_comp_nuopc.F90
R100	src/components/stub_comps/sglc/cime_config/buildlib	src/components/data_comps_nuopc/dlnd/cime_config/buildlib
A	src/components/data_comps_nuopc/dlnd/cime_config/buildnml
A	src/components/data_comps_nuopc/dlnd/cime_config/config_archive.xml
A	src/components/data_comps_nuopc/dlnd/cime_config/config_component.xml
A	src/components/data_comps_nuopc/dlnd/cime_config/namelist_definition_dlnd.xml
A	src/components/data_comps_nuopc/dlnd/cime_config/user_nl_dlnd
R100	src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90	src/components/data_comps_nuopc/dlnd/src/dlnd_comp_mod.F90
R100	src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90	src/components/data_comps_nuopc/dlnd/src/lnd_comp_nuopc.F90
R100	src/components/stub_comps/siac/cime_config/buildlib	src/components/data_comps_nuopc/docn/cime_config/buildlib
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A	src/components/data_comps_nuopc/docn/cime_config/config_archive.xml
A	src/components/data_comps_nuopc/docn/cime_config/config_component.xml
A	src/components/data_comps_nuopc/docn/cime_config/namelist_definition_docn.xml
A	src/components/data_comps_nuopc/docn/cime_config/user_nl_docn
R100	src/components/data_comps/docn/nuopc/docn_comp_mod.F90	src/components/data_comps_nuopc/docn/src/docn_comp_mod.F90
R098	src/components/data_comps/docn/nuopc/ocn_comp_nuopc.F90	src/components/data_comps_nuopc/docn/src/ocn_comp_nuopc.F90
R100	src/components/stub_comps/sice/cime_config/buildlib	src/components/data_comps_nuopc/drof/cime_config/buildlib
A	src/components/data_comps_nuopc/drof/cime_config/buildnml
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A	src/components/data_comps_nuopc/drof/cime_config/config_component.xml
A	src/components/data_comps_nuopc/drof/cime_config/namelist_definition_drof.xml
A	src/components/data_comps_nuopc/drof/cime_config/user_nl_drof
R100	src/components/data_comps/drof/nuopc/drof_comp_mod.F90	src/components/data_comps_nuopc/drof/src/drof_comp_mod.F90
R100	src/components/data_comps/drof/nuopc/rof_comp_nuopc.F90	src/components/data_comps_nuopc/drof/src/rof_comp_nuopc.F90
R100	src/components/data_comps/dshr_nuopc/dshr_dfield_mod.F90	src/components/data_comps_nuopc/dshr_nuopc/dshr_dfield_mod.F90
R100	src/components/data_comps/dshr_nuopc/dshr_fldlist_mod.F90	src/components/data_comps_nuopc/dshr_nuopc/dshr_fldlist_mod.F90
R100	src/components/data_comps/dshr_nuopc/dshr_methods_mod.F90	src/components/data_comps_nuopc/dshr_nuopc/dshr_methods_mod.F90
R100	src/components/data_comps/dshr_nuopc/dshr_nuopc_mod.F90	src/components/data_comps_nuopc/dshr_nuopc/dshr_nuopc_mod.F90
R100	src/components/stub_comps/slnd/cime_config/buildlib	src/components/data_comps_nuopc/dwav/cime_config/buildlib
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A	src/components/data_comps_nuopc/dwav/cime_config/config_archive.xml
A	src/components/data_comps_nuopc/dwav/cime_config/config_component.xml
A	src/components/data_comps_nuopc/dwav/cime_config/namelist_definition_dwav.xml
A	src/components/data_comps_nuopc/dwav/cime_config/user_nl_dwav
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R100	src/components/data_comps/dwav/nuopc/wav_comp_nuopc.F90	src/components/data_comps_nuopc/dwav/src/wav_comp_nuopc.F90
R100	src/components/stub_comps/socn/cime_config/buildlib	src/components/stub_comps_mct/satm/cime_config/buildlib
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R100	src/components/stub_comps/satm/cime_config/config_component.xml	src/components/stub_comps_mct/satm/cime_config/config_component.xml
R100	src/components/stub_comps/satm/mct/atm_comp_mct.F90	src/components/stub_comps_mct/satm/src/atm_comp_mct.F90
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R100	src/components/xcpl_comps/xlnd/cime_config/buildlib	src/components/stub_comps_mct/socn/cime_config/buildlib
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jgfouca pushed a commit that referenced this pull request Jul 7, 2020
Add Antarctica RRM support for F2010SC5-CMIP6 compset

This PR adds Antarctica RRM grid and supporting files and
enables the grid for the F2010SC5-CMIP6 compset.

[BFB]
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