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Remove options not used, e.g. use_fates, use_cndv, and many more #46

Merged
merged 92 commits into from
Dec 9, 2022
Merged

Remove options not used, e.g. use_fates, use_cndv, and many more #46

merged 92 commits into from
Dec 9, 2022

Commits on Oct 10, 2022

  1. Rm use_fates, use_cndv, use_lai_streams, use_hydrstress 

    Instead of rerunning the full SLIM test-suite, I have been confirming
that the following test continues to PASS, including against the
slim-n09_cesm2.1.4 baseline:
SMS.f19_g16.H_MML_2000_CAM6.cheyenne_intel.clm-global_uniform_g16_SOM
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  2. Rm use_dynroot, use_grainproduct, use_nguardrail 

    Testing: same as in previous commit
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  3. Rm use_extralakelayers, use_vancouver, use_mexicocity 

    Same testing as for last two commits
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Commits on Oct 11, 2022

  1. Rm use_fertizer _ozone _lch4 _c13* _c14* _snicar_frc _vichydro 

    Two tests failed in cheyenne test-suite (looks like same error to me):
SMS_D.f19_g17.IHistClm45BgcQianGs.cheyenne_gnu.clm-realistic_fromCLM5_1850
SMS_D_Lm1.f19_g17.I2000SlimRsGs.cheyenne_gnu.clm-2000_CMIP6_AMIP_1deg_ensemble
Both passed when I submitted separately.
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Commits on Oct 13, 2022

  1. Rm use_luna

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Commits on Oct 15, 2022

  1. Rm use_fun; see below for testing notes 

    Cheyenne test-suite is currently running for this commit.
For the previous most recent commit, this test passed (no other
testing performed):
SMS_D.f19_g17.IHistClm45BgcQianGs.cheyenne_gnu.clm-realistic_fromCLM5_1850
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Commits on Oct 18, 2022

  1. Rm use_nitrif_denitrif; izumi test-suite pgi PASS, others in progress

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Commits on Oct 19, 2022

  1. Rm use_vertsoilc; izumi test-suite OK (same results as before)

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  2. Rm use_century_decomp; izumi test-suite in progress

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Commits on Oct 20, 2022

  1. Rm use_bedrock, use_flexibleCN; the following nag test passed: 

    SMS_D_Lm1.f19_g17.I2000SlimRsGs.izumi_nag.clm-2000_CMIP6_AMIP_1deg_ensembleMonthly
I will submit the full test-suite at the end of today.
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  2. Rm camdenNJ asphaltjungleNJ urbanc_alpha numaIA smallvilleIA options

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  3. Getting izumi gnu test-suite to work

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  4. Merge commit '72314c2bed1e3f6cc947f47934782929547ebbfb' into cesm2_1_… 

    …slim_slevis

Fix izumi gnu test-suite failure
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Commits on Oct 21, 2022

  1. Rm irrig, npcropmin, npcropmax incomplete; details: 

    - izumi gnu test-suite OK
- /bld cleanup mostly (if not entirely) NOT done
- pftconMod unchanged to avoid paramfile-related failure
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  2. Rm irrig, npcropmin, npcropmax complete; izumi gnu test-suite OK

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  3. Rm use_crop and vestiges of c13 & c14 code (incomplete); testing: 

    izumi gnu test-suite OK
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  4. Rm use_crop (complete); izumi gnu test-suite OK

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Commits on Oct 24, 2022

  1. Some clean-up for the following izumi intel test to pass: 

    SMS_Ld400.f19_g17.IHistSlim50QianGs.izumi_intel.clm-realistic_fromCLM5_1850Monthly
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  2. Rm drydep, though not all because tied to lnd2atm; not tested

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  3. Rm ozone-related code; izumi test-suites OK

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Commits on Oct 25, 2022

  1. Rm misc. items including some ch4, lake, drydep, c13/c14

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  2. Rm orbital params; izumi gnu test-suite ok

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Commits on Oct 26, 2022

  1. Rm param-file code; start removing use_cn & bgc code; elim. bgc tests 

    Rm orbital code that I missed in the previous commit
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Commits on Oct 28, 2022

  1. Same as the testlist going in slim's main branch 

    Some compsets won't work bc they need updated compset definitions.
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  2. Merge tag 'slim0.1.006_release-cesm2.1.4' into cesm2_1_slim_slevis 

    Updating compsets, tests in test-suites, and baselines
    @slevis-lmwg
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Commits on Nov 1, 2022

  1. Rm some CN modules; izumi test-suites OK

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Commits on Nov 2, 2022

  1. Revert last commit to avoid diffs from baseline 

    In particular, diffs in fill patterns for pco2
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  2. Rm most CN, SoilBiogeochem, Species, ...; izumi nag test PASS

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  3. Rm albice, snicar, aerosol, photosynth, surfrad, surfacealbedomod, ... 

    izumi nag test PASS
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  4. Rm lake, rootbiophys, soilstate, soilwater, ...; izumi gnu test PASS

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Commits on Nov 3, 2022

  1. Rm organic, ndepStream, paramUtil; also BSW and *SAT vars from history 

    Izumi tests OK.
BSW and *SAT vars were giving diffs from baseline, so I commented them
out. I think that these vars are not used or needed by SLIM.
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  2. Rm pftcon; izumi nag test PASS

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  3. Rm pedotransfer; izumi nag test PASS

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  4. Rm DustEmission and DustDryDep; izumi nag test PASS

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  5. Rm organic_frac_squared; izumi nag test PASS

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  6. nvegwcs, n*decomp, constrain_stress_deciduous_onset, reseed_dead_plants 

    izumi nag test PASS
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Commits on Nov 6, 2022

  1. Rm ndep; izumi nag test PASS

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  2. Rm fire; izumi nag test PASS

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  3. Rm spinup; izumi nag test PASS

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  4. Rm ch4; izumi nag test PASS; other izumi tests in progress

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Commits on Nov 7, 2022

  1. Rm voc; izumi nag test PASS

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  2. Rm drydep; izumi nag test PASS

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Commits on Nov 8, 2022

  1. Rm urban (part 1); izumi nag test PASS

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Commits on Nov 14, 2022

  1. Rm most urban; cheyenne test-suite OK 

    Previous commit that removed urban had changed answers...
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  2. Merge branch 'cesm2_1_slim_slevis_rmdrydep' into cesm2_1_slim_slevis 

    Resolved conflicts:
bld/CLMBuildNamelist.pm
src/biogeophys/EnergyFluxType.F90
src/biogeophys/TemperatureType.F90
src/main/clm_instMod.F90
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  3. Rm more urban; cheyenne test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
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Commits on Nov 15, 2022

  1. Rm glc_mec; cheyenne test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
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  2. Rm glc_snow_persistence_max_days; cheyenne test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
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  3. Rm n_melt_glcmec; cheyenne test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
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  4. Rm glcmec_downscale_longwave & reset_snow_glc; cheyenne test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
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  5. Rm glacier_smb; cheyenne test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
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  6. Rm bareland_normalization; cheyenne test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
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  7. Rm glc_do_dynglacier & glc_present; cheyenne test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
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  8. Rm canopyhydrol, snowpack, lnd2atm options & create_crop_landunit 

    cheyenne test PASS (same as last few commits)
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  9. Rm bgc_mode, soilwater_movem, rooting_prof, soil_resis, hydro switches 

    and a few other things. Same cheyenne test PASS.
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  10. Rm dust; same cheyenne test PASS

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Commits on Nov 18, 2022

  1. Rm various params; cheyenne gnu test-suite OK

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Commits on Nov 22, 2022

  1. Rm lnd2glc; also many history fields; cheyenne gnu test-suite OK 

    The lnd2glc vars (glc MEC topo height, ice flux, and temp) give diff
answers now (expected). I haven't figured out how to remove them from
history.
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  2. Rm glc2lnd; cheyenne gnu test PASS 

    SMS.f19_g16.H_MML_2000_CAM6.cheyenne_gnu.clm-global_uniform_g16_SOM
Same comment about lnd2glc vars as in last commit.
    @slevis-lmwg
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Commits on Nov 23, 2022

  1. Rm handle_ice_runoff, maxpatch_pft; cheyenne gnu ERS test OK

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Commits on Nov 28, 2022

  1. Rm glacier_region_ice_runoff_behavior; cheyenne gnu ERS test OK

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  2. Rm soil_layerstruct; cheyenne gnu ERS test OK

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  3. Rm melt_behavior; cheyenne gnu ERS test OK

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  4. Rm melt_replaced_by_ice, has_virtual_columns; cheyenne gnu ERS test OK

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Commits on Nov 29, 2022

  1. Rm most of ActiveLayerMod; cheyenne gnu ERS test OK

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  2. Rm all ActiveLayerMod; cheyenne gnu ERS test OK

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  3. Rm CanopyStateType; cheyenne gnu ERS test OK

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  4. Rm some of WaterfluxType; cheyenne gnu ERS test OK

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  5. Rm most of WaterfluxType; cheyenne gnu ERS test OK

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Commits on Nov 30, 2022

  1. Rm some of WaterStateType; cheyenne gnu ERS test OK

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Commits on Dec 1, 2022

  1. Rm nbedrock; cheyenne gnu ERS test OK

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  2. Rm more bedrock stuff; cheyenne gnu ERS test OK

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  3. Rm SoilHydrology stuff; cheyenne gnu ERS test OK

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  4. Rm SoilHydrology* & parts of SoilState*; cheyenne gnu ERS test OK

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Commits on Dec 2, 2022

  1. Rm some of SoilState*; cheyenne gnu ERS test OK

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  2. Rm more SoilState*; cheyenne gnu ERS test OK

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  3. Rm most SoilState*; cheyenne gnu ERS test OK

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  4. Begin to rm h2osoi_vol_col; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 2, 2022
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Commits on Dec 3, 2022

  1. Rm SoilState* + some WaterStateType; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 3, 2022
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Commits on Dec 5, 2022

  1. Rm most InitAcc* & UpdateAcc* subroutines; cheyenne gnu ERS OK

    @slevis-lmwg
    slevis-lmwg committed Dec 5, 2022
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  2. Rm much of SurfaceAlbedoType; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 5, 2022
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  3. Rm most of TemperatureType; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 5, 2022
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Commits on Dec 6, 2022

  1. Rm most EnergyFluxType + SolarAbsorbedType; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 6, 2022
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  2. Rm FrictionVelocityMod & subroutines rhoSat + lnd2atm; same ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 6, 2022
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  3. Rm atm2lndMod, also a few more variables; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 6, 2022
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  4. Rm SolarAbsorbed, Waterflux, parts of TopoMod; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 6, 2022
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  5. Rm atm2lnd_params_* and related code; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 6, 2022
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Commits on Dec 7, 2022

  1. Rm part of atm2lndType; cheyenne gnu ERS test OK

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    slevis-lmwg committed Dec 7, 2022
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  2. Rm more of atm2lndType; cheyenne gnu ERS test OK

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    slevis-lmwg committed Dec 7, 2022
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  3. Rm fert_cft and miscellaneous clean-up; cheyenne gnu ERS test OK

    @slevis-lmwg
    slevis-lmwg committed Dec 7, 2022
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Commits on Dec 8, 2022

  1. Miscellaneous clean-up; cheyenne test-suite one test fails per compiler 

    SMS_D_Lm1.f19_g17.I2000SlimRsGs.cheyenne_gnu.clm-2000_CMIP6_AMIP_1deg_ensembleMonthly
SMS_D_Lm1.f19_g17.I2000SlimRsGs.cheyenne_intel.clm-2000_CMIP6_AMIP_1deg_ensembleMonthly
Investigating...
    @slevis-lmwg
    slevis-lmwg committed Dec 8, 2022
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  2. Changed 2000_CMIP6_AMIP_1deg_ensemble testmods to coldstart 

    Answers didn't change. Reason for going with coldstart:
The corresponding tests were aborting with variable not found in
initInterpMultilevelContainer.F90 lines 106-114, failing to find
coord_varname = 'COL_Z' and/or level_class_varname = 'LEVGRND_CLASS'.
Instead of reintroducing code that ultimately is unnecessary to SLIM
just to get this function to work, I decided to use coldstart for these
tests.
    @slevis-lmwg
    slevis-lmwg committed Dec 8, 2022
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