Some answer changes for release branch

bld/namelist_files/namelist_defaults_clm4_5.xml

@@ -1098,7 +1098,7 @@ lnd/clm2/surfdata_map/landuse.timeseries_ne30np4_hist_16pfts_Irrig_CMIP6_simyr18
 <stream_year_last_soilm   >1997</stream_year_last_soilm>
 <model_year_align_soilm   >1997</model_year_align_soilm>
 
-<stream_fldfilename_soilm hgrid="0.9x1.25">lnd/clm2/prescribed_data/LFMIP-pdLC-SST.H2OSOI.0.9x1.25.20levsoi.natveg.climo1980-2014.MONS_c190709.nc</stream_fldfilename_soilm>
+<stream_fldfilename_soilm hgrid="0.9x1.25">lnd/clm2/prescribed_data/LFMIP-pdLC-SST.H2OSOI.0.9x1.25.20levsoi.natveg.1980-2014.MONS_climo.c190716.nc</stream_fldfilename_soilm>
 
 <soilm_tintalgo>linear</soilm_tintalgo>
 <soilm_offset  >0</soilm_offset>
@@ -1211,24 +1211,40 @@ lnd/clm2/surfdata_map/landuse.timeseries_ne30np4_hist_16pfts_Irrig_CMIP6_simyr18
 <stream_year_last_urbantv  phys="clm5_0" sim_year_range="1850-2100" >2106</stream_year_last_urbantv>
 <model_year_align_urbantv  phys="clm5_0" sim_year_range="1850-2100" >2015</model_year_align_urbantv>
 
-<stream_year_first_urbantv phys="clm4_5"  >2000</stream_year_first_urbantv>
-<stream_year_last_urbantv  phys="clm4_5"  >2000</stream_year_last_urbantv>
+<stream_year_first_urbantv phys="clm4_5" sim_year_range="1850-2100" >2015</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5" sim_year_range="1850-2100" >2106</stream_year_last_urbantv>
+<model_year_align_urbantv  phys="clm4_5" sim_year_range="1850-2100" >2015</model_year_align_urbantv>
 
 <stream_year_first_urbantv phys="clm5_0" sim_year="2000" >2000</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0" sim_year="2000" >2000</stream_year_last_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5" sim_year="2000" >2000</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5" sim_year="2000" >2000</stream_year_last_urbantv>
+
 <stream_year_first_urbantv phys="clm5_0" sim_year="1850" >1850</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0" sim_year="1850" >1850</stream_year_last_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5" sim_year="1850" >1850</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5" sim_year="1850" >1850</stream_year_last_urbantv>
+
 <stream_year_first_urbantv phys="clm5_0" sim_year="1000" >2000</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0" sim_year="1000" >2000</stream_year_last_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5" sim_year="1000" >2000</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5" sim_year="1000" >2000</stream_year_last_urbantv>
+
 <stream_year_first_urbantv phys="clm5_0" sim_year="constant" sim_year_range="1000-1002" >2000</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0" sim_year="constant" sim_year_range="1000-1002" >2000</stream_year_last_urbantv>
 
 <stream_year_first_urbantv phys="clm5_0" sim_year="constant" sim_year_range="1000-1004" >2000</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0" sim_year="constant" sim_year_range="1000-1004" >2000</stream_year_last_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5" sim_year="constant" sim_year_range="1000-1002" >2000</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5" sim_year="constant" sim_year_range="1000-1002" >2000</stream_year_last_urbantv>
+
+<stream_year_first_urbantv phys="clm4_5" sim_year="constant" sim_year_range="1000-1004" >2000</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5" sim_year="constant" sim_year_range="1000-1004" >2000</stream_year_last_urbantv>
+
 <stream_fldfilename_urbantv phys="clm5_0" hgrid="0.9x1.25" >lnd/clm2/urbandata/CLM50_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923.nc</stream_fldfilename_urbantv>
 
 <stream_fldfilename_urbantv phys="clm4_5" hgrid="0.9x1.25" >lnd/clm2/urbandata/CLM45_tbuildmax_Oleson_2016_0.9x1.25_simyr1849-2106_c160923.nc</stream_fldfilename_urbantv>

bld/namelist_files/use_cases/1850_control.xml

@@ -32,9 +32,15 @@
 <stream_year_first_urbantv phys="clm5_0"  >1850</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0"  >1850</stream_year_last_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5"  >1850</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5"  >1850</stream_year_last_urbantv>
+
 <!-- Use single year ndep file for CLM50 as the new multi-year file has different times that change answers relative to control sims -->
 <stream_fldfilename_ndep phys="clm5_0" use_cn=".true."
 >lnd/clm2/ndepdata/fndep_clm_WACCM6_CMIP6piControl001_y21-50avg_1850monthly_0.95x1.25_c180802.nc</stream_fldfilename_ndep>
+
+<stream_fldfilename_ndep phys="clm4_5" use_cn=".true."
+>lnd/clm2/ndepdata/fndep_clm_WACCM6_CMIP6piControl001_y21-50avg_1850monthly_0.95x1.25_c180802.nc</stream_fldfilename_ndep>
 
 <ndep_taxmode            phys="clm5_0" use_cn=".true." >cycle</ndep_taxmode>
 

bld/namelist_files/use_cases/1850_noanthro_control.xml

@@ -42,6 +42,9 @@
 <stream_year_first_urbantv phys="clm5_0"  >1850</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0"  >1850</stream_year_last_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5"  >1850</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5"  >1850</stream_year_last_urbantv>
+
 <!-- Turn calculation of human stress indices all the way off to save some CPU -->
 <calc_human_stress_indices     >NONE</calc_human_stress_indices>
 

bld/namelist_files/use_cases/2000_control.xml

@@ -33,4 +33,7 @@
 <stream_year_first_urbantv phys="clm5_0" >2000</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0" >2000</stream_year_last_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5" >2000</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5" >2000</stream_year_last_urbantv>
+
 </namelist_defaults>

bld/namelist_files/use_cases/2010_control.xml

@@ -33,4 +33,7 @@
 <stream_year_first_urbantv phys="clm5_0" >2010</stream_year_first_urbantv>
 <stream_year_last_urbantv  phys="clm5_0" >2010</stream_year_last_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5" >2010</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5" >2010</stream_year_last_urbantv>
+
 </namelist_defaults>

bld/namelist_files/use_cases/20thC_transient.xml

@@ -49,4 +49,8 @@
 <stream_year_last_urbantv  phys="clm5_0"  >2106</stream_year_last_urbantv>
 <model_year_align_urbantv  phys="clm5_0"  >1850</model_year_align_urbantv>
 
+<stream_year_first_urbantv phys="clm4_5"  >1850</stream_year_first_urbantv>
+<stream_year_last_urbantv  phys="clm4_5"  >2106</stream_year_last_urbantv>
+<model_year_align_urbantv  phys="clm4_5"  >1850</model_year_align_urbantv>
+
 </namelist_defaults>

cime_config/testdefs/ExpectedTestFails.xml

@@ -14,5 +14,7 @@
     <entry issue="667"              >FAIL ERS_D_Ld5.1x1_brazil.I2000Clm50FatesCruGs.cheyenne_intel.clm-FatesHydro COMPARE_base_rest</entry>
     <entry issue="667"              >FAIL ERS_D_Ld5.1x1_brazil.I2000Clm50FatesCruGs.hobart_nag.clm-FatesHydro RUN</entry>
     <entry issue="NGEET/fates/#510" >FAIL SMS_Lm3_D_Mmpi-serial.1x1_brazil.I2000Clm50FatesCruGs.hobart_nag.clm-FatesHydro MEMLEAK</entry>
+    <entry issue="667"              >FAIL ERS_D_Ld5.1x1_brazil.I2000Clm50FatesCruGs.izumi_nag.clm-FatesHydro RUN</entry>
+    <entry issue="NGEET/fates/#510" >FAIL SMS_Lm3_D_Mmpi-serial.1x1_brazil.I2000Clm50FatesCruGs.izumi_nag.clm-FatesHydro MEMLEAK</entry>
   </category>
 </expectedFails> 

cime_config/testdefs/testmods_dirs/clm/prescribed/user_nl_clm

@@ -1,3 +1,6 @@
  use_soil_moisture_streams = .true.
  use_lai_streams = .true.
  hist_fincl1   += 'H2OSOI_PRESCRIBED_GRC'
+ soilm_tintalgo = 'lower'    ! set time interpolation to use lower value, so can compare to input dataset
+ lai_tintalgo = 'lower'      ! set time interpolation to use lower value, so can compare more directly to input dataset
+ soilm_ignore_data_if_missing = .true.

doc/ChangeSum

@@ -1,5 +1,6 @@
 Tag                   Who      Date  Summary
 ============================================================================================================================
+release-clm5.0.29     erik 11/19/2019 Some answer changes needed for prescribed soil-moisture and clm4_5 defaults (1850-ndep, and urbantv settings)
 release-clm5.0.28     erik 11/14/2019 Several bit-for-bit fixes especially around soil-moisture streams
 release-clm5.0.27     erik 08/13/2019 Add presoribed soil moisture streams as an option, and a few fixes
 release-clm5.0.26    sacks 07/29/2019 Add a CN precision control call to fix problems related to small negative values

doc/release-clm5.0.ChangeLog

@@ -1,4 +1,118 @@
 ===============================================================
+Tag name:  release-clm5.0.29
+Originator(s):  erik (Erik Kluzek,UCAR/TSS,303-497-1326)
+Date: Tue Nov 19 12:14:02 MST 2019
+One-line Summary: Some answer changes needed for prescribed soil-moisture and clm4_5 defaults (1850-ndep, and urbantv settings)
+
+Purpose of this version:
+------------------------
+
+Some answer changes needed for prescribed soil-moisture. And clm4_5 defaults for 1850 Nitrogen deposition and or urbantv
+settings were made to be consistent with clm5_0.
+
+
+CTSM Master Tag This Corresponds To: ctsm1.0.dev025 (with many other changes)
+
+Summary of changes:
+-------------------
+
+Issues fixed (include CTSM Issue #): #175, #817, #832 #833
+
+   Fixes #817 -- Have clm4_5 use the same ndep file as clm5_0 for 1850
+   Fixes #175 -- Have clm4_5 use the same settings for urbantv years as clm5_0
+   Fixes #832 -- don't override with missing value, let the model set it
+   Fixes #833 -- time interpolation of soilm causes bad values for some missing points
+
+Science changes since: release-clm5.0.28
+
+   Defaults for clm4_5, prescribed soil-moisture
+
+   Some defaults were changed for clm4_5 to be consistent with clm5_0 (use of the same 1850-ndep file, 
+   and changes in the urbantv year settings)
+
+   Prescribed soil-moisture was changes so that if time-interpolation produces large values, they
+   will be marked as missing (spval). Also points where the input prescribed soil moisture is missing
+   are now ignored (and run normally).
+
+Software changes since:  release-clm5.0.28
+
+
+Changes to User Interface since: release-clm5.0.28
+
+  Behavior of soilm_ignore_data_if_missing changes!
+
+  Behavior of soilm_ignore_data_if_missing changes. Now if true will ignore any points
+  where the prescribed soil moisture dataset is missing. So for these points the model
+  will run normally (as if prescribed soil moisture was off). Before it would mark them
+  as missing, but modify h2osoi_ice/liq in an odd fashion.
+
+Testing:
+--------
+
+ [PASS means all tests PASS and OK means tests PASS other than expected fails.]
+
+  build-namelist tests:
+
+    cheyenne - PASS (10 tests are different)
+
+  unit-tests (components/clm/src):
+
+    cheyenne - PASS
+    hobart --- PASS
+
+  tools-tests (components/clm/test/tools):
+
+    cheyenne - NOT run
+    hobart --- NOT run
+
+  PTCLM testing (components/clm/tools/shared/PTCLM/test):
+
+     cheyenne - NOT run
+     hobart --- NOT run
+
+  regular tests (aux_clm):
+
+    cheyenne_intel ---- OK
+    cheyenne_gnu ------ OK
+    izumi_nag --------- OK
+    izumi_pgi --------- OK
+    izumi_intel ------- OK
+
+Summary of Answer changes:
+-------------------------
+
+If the tag used for baseline comparisons was NOT the previous tag, note that here: previous
+
+Changes answers relative to baseline: Yes for some! prescribed soil-moisture and clm4_5 (1850-ndep, and urbantv settings)
+
+  Summarize any changes to answers, i.e.,
+    - what code configurations: prescribed soil-moisture, or clm4_5 due to default changes in 1850-ndep and urbantv
+    - what platforms/compilers: all
+    - nature of change:  similar climate
+
+  Will new REFCASES need to be made for cesm and/or CAM?: No
+
+Detailed list of changes:
+------------------------
+
+Externals being used: No changes
+
+   cism:   release-cesm2.0.04
+   rtm:    release-cesm2.0.03
+   mosart: release-cesm2.0.03
+   cime:   cim5.6.25
+   FATES:  fates_s1.21.0_a7.0.0_br_rev2
+   PTCLM:  PTCLM2_180611
+
+CTSM Tag versions pulled over from master development branch: None
+
+Pull Requests that document the changes (include PR ids): #841
+(https://github.com/ESCOMP/ctsm/pull)
+
+  #841 -- Some answer changes for release branch
+
+===============================================================
+===============================================================
 Tag name:  release-clm5.0.28
 Originator(s):  erik (Erik Kluzek)
 Date: Thu Nov 14 23:03:39 MST 2019

src/biogeophys/SoilMoistureStreamMod.F90

@@ -344,9 +344,9 @@ subroutine PrescribedSoilMoistureInterp(bounds, soilstate_inst, &
 
              ! If soil moiture is being interpolated in time and the result is
              ! large that probably means one of the two data points is missing (set to spval)
-             !if ( h2osoi_vol_prs(g,j) > 10.0_r8 .and. (h2osoi_vol_prs(g,j) /= spval) )then
-                !h2osoi_vol_prs(g,j) = spval
-             !end if
+             if ( h2osoi_vol_prs(g,j) > 10.0_r8 .and. (h2osoi_vol_prs(g,j) /= spval) )then
+                h2osoi_vol_prs(g,j) = spval
+             end if
 
          end do
       end do
@@ -358,8 +358,7 @@ subroutine PrescribedSoilMoistureInterp(bounds, soilstate_inst, &
          g = col%gridcell(c)
          ig = g_to_ig(g)
 
-         if (lun%itype(col%landunit(c)) == istsoil ) then
-         !if ( (lun%itype(col%landunit(c)) == istsoil) .or. (lun%itype(col%landunit(c)) == istcrop) ) then
+         if ( (lun%itype(col%landunit(c)) == istsoil) .or. (lun%itype(col%landunit(c)) == istcrop) ) then
             !       this is a 2d field (gridcell/nlevsoi) !
             do j = 1, nlevsoi
 
@@ -375,7 +374,7 @@ subroutine PrescribedSoilMoistureInterp(bounds, soilstate_inst, &
                   ! file is different
                   if ( (h2osoi_vol_prs(g,j) == spval) .and. (h2osoi_vol_initial /= spval) )then
                      if ( soilm_ignore_data_if_missing )then
-                        !cycle
+                        cycle
                      else
                         write(iulog,*) 'Input soil moisture dataset is not vegetated as expected: gridcell=', &
                                         g, ' active = ', col%active(c)