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BTD fields with RZ + openPMD - single mode only #3350

Merged
merged 11 commits into from
Oct 31, 2022
Merged

BTD fields with RZ + openPMD - single mode only #3350

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e93a8c1
cell center BTD functors for RZ with openpmd
RevathiJambunathan Aug 30, 2022
2a26edd
add RZ modes to output varnames too
RevathiJambunathan Sep 19, 2022
be41c82
update varnames once and set map for RZ fields in BTfunctor
RevathiJambunathan Sep 20, 2022
617b9b3
fix access to varname field instead of unallocated m_varnames, and up…
RevathiJambunathan Oct 24, 2022
0b02b68
set back trasnformed fields to false if fields_to_plot is none. Sepa…
RevathiJambunathan Oct 24, 2022
6b5003a
clean commented line
RevathiJambunathan Oct 24, 2022
aa55c84
assert for single rz mode
RevathiJambunathan Oct 24, 2022
49c5bc8
[pre-commit.ci] auto fixes from pre-commit.com hooks
pre-commit-ci[bot] Oct 25, 2022
41f8ce0
remove unused var
RevathiJambunathan Oct 25, 2022
14d4a17
Apply suggestions from code review
RevathiJambunathan Oct 28, 2022
7ff0c4e
adding comments, doxygen, and clean-up
RevathiJambunathan Oct 28, 2022
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17 changes: 17 additions & 0 deletions Source/Diagnostics/BTDiagnostics.H
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Original file line number Diff line number Diff line change
Expand Up @@ -74,6 +74,11 @@ private:
* is initialized.
*/
void InitializeFieldFunctors (int lev) override;

void InitializeFieldFunctorsRZopenPMD (int lev) override;
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/** Whether to dump the RZ modes */
bool m_dump_rz_modes = false;
void AddRZModesToOutputNames (const std::string& field, const int ncomp, bool cellcenter_data);
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/** This function allocates and initializes particle buffers for all the snapshots.
* This is currently an empty function:
* The particle containers required for this must be added to populate this function.
Expand Down Expand Up @@ -313,9 +318,20 @@ private:
* All the fields are stored regardless of the specific fields to plot selected
* by the user.
*/
#ifdef WARPX_DIM_RZ
amrex::Vector< std::string > m_cellcenter_varnames = {"Er", "Et", "Ez",
"Br", "Bt", "Bz",
"jr", "jt", "jz", "rho"};
amrex::Vector< std::string > m_cellcenter_varnames_fields = {"Er", "Et", "Ez",
"Br", "Bt", "Bz",
"jr", "jt", "jz",
"rho"};
#else
amrex::Vector< std::string > m_cellcenter_varnames = {"Ex", "Ey", "Ez",
"Bx", "By", "Bz",
"jx", "jy", "jz", "rho"};
#endif


/** Merge the lab-frame buffer multifabs so it can be visualized as
* a single plotfile
Expand Down Expand Up @@ -356,6 +372,7 @@ private:
void ClearParticleBuffer(int i_buffer);
/** Redistributes particles to the buffer box array in the lab-frame */
void RedistributeParticleBuffer (const int i_buffer);
void UpdateVarnamesForRZopenPMD();

};
#endif // WARPX_BTDIAGNOSTICS_H_
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