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Activate MALI thermal solver and update configuration to be relevant to both AIS and GIS grids #6559

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merged 5 commits into from
Sep 6, 2024
Merged

Activate MALI thermal solver and update configuration to be relevant to both AIS and GIS grids #6559

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49e1cb2
Add additional fields to history files
matthewhoffman Aug 13, 2024
42412f3
Update MALI nl defaults
matthewhoffman Aug 13, 2024
36147b9
Adjust MALI buildnml to look for mesh-specific albany_input.yaml files
matthewhoffman Aug 14, 2024
57c057e
Update glcshelf test to use ais8to30 mesh
matthewhoffman Aug 14, 2024
e9c56ec
Turn on depth-int solver for 1km GIS; add more output vars
matthewhoffman Aug 27, 2024
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2 changes: 1 addition & 1 deletion cime_config/tests.py
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Original file line number Diff line number Diff line change
Expand Up @@ -302,7 +302,7 @@
"SMS.ne30_f19_g16_rx1.A",
"ERS_Ld5.T62_oQU120.CMPASO-NYF",
"ERS.f09_g16_g.MALISIA",
"ERS_Ld5.TL319_oQU240wLI_ais20.MPAS_LISIO_JRA1p5.mpaso-ocn_glcshelf",
"ERS_Ld5.TL319_oQU240wLI_ais8to30.MPAS_LISIO_JRA1p5.mpaso-ocn_glcshelf",
"SMS_P12x2.ne4pg2_oQU480.WCYCL1850NS.allactive-mach_mods",
"ERS_Ln9.ne4pg2_ne4pg2.F2010-MMF1.eam-mmf_crmout",
)
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231 changes: 231 additions & 0 deletions components/mpas-albany-landice/bld/namelist_files/albany_input.ais20km.yaml
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@@ -0,0 +1,231 @@
%YAML 1.1
---
ANONYMOUS:

# Discretization Description
Discretization:
#Exodus Output File Name: albany_output.exo

Piro:
# Nonlinear Solver Information
NOX:
Nonlinear Solver: Line Search Based
Line Search:
Full Step:
Full Step: 1.0e+00
Method: Backtrack
Solver Options:
Status Test Check Type: Minimal
Status Tests:
Test Type: Combo
Combo Type: OR
Number of Tests: 2
Test 0:
Test Type: Combo
Combo Type: AND
Number of Tests: 2
Test 0:
Test Type: NormF
Norm Type: Two Norm
Scale Type: Unscaled
Tolerance: 1.0e-03
Test 1:
Test Type: RelativeNormF
Norm Type: Two Norm
Tolerance: 0.9999
Test 1:
Test Type: MaxIters
Maximum Iterations: 100
Printing:
Output Precision: 3
Output Processor: 0
Output Information:
Error: true
Warning: true
Outer Iteration: true
Parameters: false
Details: false
Linear Solver Details: false
Stepper Iteration: true
Stepper Details: true
Stepper Parameters: true

Direction:
Method: Newton
Newton:
Forcing Term Method: Type 2
Rescue Bad Newton Solve: true
Linear Solver:
Write Linear System: false
Tolerance: 1.0e-8

Stratimikos Linear Solver:
Stratimikos:

# Linear Solver Information
Linear Solver Type: Belos
Linear Solver Types:
Belos:
Solver Type: Block GMRES
Solver Types:
Block GMRES:
Output Frequency: 20
Output Style: 1
Verbosity: 33
Maximum Iterations: 200
Block Size: 1
Num Blocks: 200
Flexible Gmres: false
VerboseObject:
Output File: none
Verbosity Level: low

# Preconditioner Information
Preconditioner Type: MueLu
Preconditioner Types:

Ifpack2:
Overlap: 1
Prec Type: ILUT

MueLu:
Matrix:
PDE equations: 2
Factories:
myLineDetectionFact:
factory: LineDetectionFactory
'linedetection: orientation': coordinates
mySemiCoarsenPFact1:
factory: SemiCoarsenPFactory
'semicoarsen: coarsen rate': 14
UncoupledAggregationFact2:
factory: UncoupledAggregationFactory
'aggregation: ordering': graph
'aggregation: max selected neighbors': 0
'aggregation: min agg size': 3
'aggregation: phase3 avoid singletons': true
MyCoarseMap2:
factory: CoarseMapFactory
Aggregates: UncoupledAggregationFact2
myTentativePFact2:
'tentative: calculate qr': true
factory: TentativePFactory
Aggregates: UncoupledAggregationFact2
CoarseMap: MyCoarseMap2
mySaPFact2:
'sa: eigenvalue estimate num iterations': 10
'sa: damping factor': 1.33333e+00
factory: SaPFactory
P: myTentativePFact2
myTransferCoordinatesFact:
factory: CoordinatesTransferFactory
CoarseMap: MyCoarseMap2
Aggregates: UncoupledAggregationFact2
myTogglePFact:
factory: TogglePFactory
'semicoarsen: number of levels': 2
TransferFactories:
P1: mySemiCoarsenPFact1
P2: mySaPFact2
Ptent1: mySemiCoarsenPFact1
Ptent2: myTentativePFact2
Nullspace1: mySemiCoarsenPFact1
Nullspace2: myTentativePFact2
myRestrictorFact:
factory: TransPFactory
P: myTogglePFact
myToggleTransferCoordinatesFact:
factory: ToggleCoordinatesTransferFactory
Chosen P: myTogglePFact
TransferFactories:
Coordinates1: mySemiCoarsenPFact1
Coordinates2: myTransferCoordinatesFact
myRAPFact:
factory: RAPFactory
P: myTogglePFact
R: myRestrictorFact
TransferFactories:
For Coordinates: myToggleTransferCoordinatesFact
myRepartitionHeuristicFact:
factory: RepartitionHeuristicFactory
A: myRAPFact
'repartition: min rows per proc': 3000
'repartition: max imbalance': 1.327e+00
'repartition: start level': 1
myZoltanInterface:
factory: ZoltanInterface
A: myRAPFact
Coordinates: myToggleTransferCoordinatesFact
number of partitions: myRepartitionHeuristicFact
myRepartitionFact:
factory: RepartitionFactory
A: myRAPFact
Partition: myZoltanInterface
'repartition: remap parts': true
number of partitions: myRepartitionHeuristicFact
myRebalanceProlongatorFact:
factory: RebalanceTransferFactory
type: Interpolation
P: myTogglePFact
Coordinates: myToggleTransferCoordinatesFact
Nullspace: myTogglePFact
myRebalanceRestrictionFact:
factory: RebalanceTransferFactory
type: Restriction
R: myRestrictorFact
myRebalanceAFact:
factory: RebalanceAcFactory
A: myRAPFact
TransferFactories: { }
mySmoother1:
factory: TrilinosSmoother
type: LINESMOOTHING_BANDEDRELAXATION
'smoother: pre or post': both
ParameterList:
'relaxation: type': Gauss-Seidel
'relaxation: sweeps': 1
'relaxation: damping factor': 1.0
mySmoother3:
factory: TrilinosSmoother
type: RELAXATION
'smoother: pre or post': both
ParameterList:
'relaxation: type': Gauss-Seidel
'relaxation: sweeps': 1
'relaxation: damping factor': 1.0
mySmoother4:
factory: TrilinosSmoother
type: RELAXATION
'smoother: pre or post': pre
ParameterList:
'relaxation: type': Gauss-Seidel
'relaxation: sweeps': 4
'relaxation: damping factor': 1.0
Hierarchy:
max levels: 7
'coarse: max size': 2000
verbosity: None
Finest:
Smoother: mySmoother1
CoarseSolver: mySmoother4
P: myRebalanceProlongatorFact
Nullspace: myRebalanceProlongatorFact
CoarseNumZLayers: myLineDetectionFact
LineDetection_Layers: myLineDetectionFact
LineDetection_VertLineIds: myLineDetectionFact
A: myRebalanceAFact
Coordinates: myRebalanceProlongatorFact
Importer: myRepartitionFact
All:
startLevel: 1
Smoother: mySmoother4
CoarseSolver: mySmoother4
P: myRebalanceProlongatorFact
Nullspace: myRebalanceProlongatorFact
CoarseNumZLayers: myLineDetectionFact
LineDetection_Layers: myLineDetectionFact
LineDetection_VertLineIds: myLineDetectionFact
A: myRebalanceAFact
Coordinates: myRebalanceProlongatorFact
Importer: myRepartitionFact

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