duplicate gene names warning

[fabio-t]

Warning: The gene RLF contains more than one matching IDs, both will be used.

These warnings can be a real nuisance. We should only print them when verbosity is set by the user.

[fabio-t]

Also please investigate the difficulty of getting non-capitalised gene names for appropriate organisms (eg, for mouse RLF should be Rlf - is the gene annotation being fetched for the right organism?)

[chaochungkuo]

Yes. This is a topic we should talk about. The initial setup by Eduardo is to convert all gene names to capitalized and then do the matching. If the user specifies the organism properly, I don't see any problem. But it is true that the output gene names are all capitalized and it is tricky to convert them back to their original form. *Joseph Chao-Chung Kuo* Am Fr., 5. Apr. 2019 um 16:58 Uhr schrieb Fabio Ticconi < [email protected]>:

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