build,refactor: update development tooling and package configuration

.pre-commit-config.yaml

@@ -1,57 +1,80 @@
+# NOTE: pre-commit runs all hooks from the root folder of the repository,
+# as regular git hooks do. Therefore, paths passed as arguments to the plugins
+# should always be relative to the root folder.
+
+default_stages: [pre-commit, pre-push]
+default_language_version:
+  python: python3.11
+minimum_pre_commit_version: 3.8.0
+files: |
+  (?x)^(
+      tools/.*|
+      model/common/.*
+  )$
+
 repos:
-  - repo: local
-    hooks:
-      - id: run-common-precommit
-        name: Run Model Common Pre-commit
-        entry: pre-commit run --config model/common/.pre-commit-config.yaml --all-files
-        language: system
-        pass_filenames: false
-        always_run: true
-
-      - id: run-driver-precommit
-        name: Run Model Driver Pre-commit
-        entry: pre-commit run --config model/driver/.pre-commit-config.yaml --all-files
-        language: system
-        pass_filenames: false
-        always_run: true
-
-      - id: run-atmosphere-advection-precommit
-        name: Run Model Atmosphere Advection Pre-commit
-        entry: pre-commit run --config model/atmosphere/advection/.pre-commit-config.yaml --all-files
-        language: system
-        pass_filenames: false
-        always_run: true
-
-      - id: run-atmosphere-diffusion-precommit
-        name: Run Model Atmosphere Diffusion Pre-commit
-        entry: pre-commit run --config model/atmosphere/diffusion/.pre-commit-config.yaml --all-files
-        language: system
-        pass_filenames: false
-        always_run: true
-
-      - id: run-atmosphere-dycore-precommit
-        name: Run Model Atmosphere Dycore Pre-commit
-        entry: pre-commit run --config model/atmosphere/dycore/.pre-commit-config.yaml --all-files
-        language: system
-        pass_filenames: false
-        always_run: true
-
-      - id: run-atmosphere-subgrid_scale_physics-microphysics-precommit
-        name: Run Model Atmosphere Subgrid_scale_physics Microphysics Pre-commit
-        entry: pre-commit run --config model/atmosphere/subgrid_scale_physics/microphysics/.pre-commit-config.yaml --all-files
-        language: system
-        pass_filenames: false
-        always_run: true
-
-      - id: run-tools-precommit
-        name: Run Tools Pre-commit
-        entry: pre-commit run --config tools/.pre-commit-config.yaml --all-files
-        language: system
-        pass_filenames: false
-        always_run: true
-
-  - repo: https://github.com/gauge-sh/tach-pre-commit
-    rev: v0.10.7
-    hooks:
-    - id: tach
-      name: Check inter-package dependencies
+- repo: meta
+  hooks:
+  - id: check-hooks-apply
+    stages: [manual]
+  - id: check-useless-excludes
+    stages: [manual]
+
+- repo: https://github.com/pre-commit/pre-commit-hooks
+  rev: v4.3.0
+  hooks:
+  - id: check-case-conflict
+  - id: check-merge-conflict
+  - id: check-shebang-scripts-are-executable
+  - id: check-symlinks
+  - id: check-yaml
+  - id: debug-statements
+  - id: destroyed-symlinks
+
+- repo: https://github.com/macisamuele/language-formatters-pre-commit-hooks
+  rev: v2.6.0
+  hooks:
+  - id: pretty-format-ini
+    args: [--autofix]
+  - id: pretty-format-toml
+    args: [--autofix]
+  - id: pretty-format-yaml
+    args: [--autofix, --preserve-quotes, --indent, "2"]
+
+- repo: https://github.com/pre-commit/mirrors-prettier
+  rev: v3.0.0-alpha.4
+  hooks:
+  - id: prettier
+    types_or: [markdown, json]
+
+- repo: https://github.com/Lucas-C/pre-commit-hooks
+  rev: v1.5.5
+  hooks:
+  - id: insert-license
+    name: add license for all ICON4Py Python source files
+    types: [python]
+    args: [--comment-style, "|#|", --license-filepath, HEADER.txt, --fuzzy-match-generates-todo]
+
+- repo: https://github.com/astral-sh/ruff-pre-commit
+  rev: v0.2.2
+  hooks:
+  - id: ruff
+    args: [--fix]
+  - id: ruff-format
+
+- repo: https://github.com/gauge-sh/tach-pre-commit
+  rev: v0.16.0
+  hooks:
+  - id: tach
+    name: Check inter-package dependencies
+
+# - repo: local
+#   hooks:
+#   - id: mypy
+#     name: mypy static type checker
+#     entry: bash -c 'mypy tools/src/icon4pytools model/common/src/icon4py/model/common'
+#     language: system
+#     types_or: [python, pyi]
+#     pass_filenames: false
+#     require_serial: true
+#     stages: [pre-commit]

.python-version

@@ -0,0 +1 @@
+3.11

CODE_OF_CONDUCT.md

@@ -0,0 +1,134 @@
+
+# Contributor Covenant Code of Conduct
+
+## Our Pledge
+
+We as members, contributors, and leaders pledge to make participation in our
+community a harassment-free experience for everyone, regardless of age, body
+size, visible or invisible disability, ethnicity, sex characteristics, gender
+identity and expression, level of experience, education, socio-economic status,
+nationality, personal appearance, race, caste, color, religion, or sexual
+identity and orientation.
+
+We pledge to act and interact in ways that contribute to an open, welcoming,
+diverse, inclusive, and healthy community.
+
+## Our Standards
+
+Examples of behavior that contributes to a positive environment for our
+community include:
+
+* Demonstrating empathy and kindness toward other people
+* Being respectful of differing opinions, viewpoints, and experiences
+* Giving and gracefully accepting constructive feedback
+* Accepting responsibility and apologizing to those affected by our mistakes,
+  and learning from the experience
+* Focusing on what is best not just for us as individuals, but for the overall
+  community
+
+Examples of unacceptable behavior include:
+
+* The use of sexualized language or imagery, and sexual attention or advances of
+  any kind
+* Trolling, insulting or derogatory comments, and personal or political attacks
+* Public or private harassment
+* Publishing others' private information, such as a physical or email address,
+  without their explicit permission
+* Other conduct which could reasonably be considered inappropriate in a
+  professional setting
+
+## Enforcement Responsibilities
+
+Community leaders are responsible for clarifying and enforcing our standards of
+acceptable behavior and will take appropriate and fair corrective action in
+response to any behavior that they deem inappropriate, threatening, offensive,
+or harmful.
+
+Community leaders have the right and responsibility to remove, edit, or reject
+comments, commits, code, wiki edits, issues, and other contributions that are
+not aligned to this Code of Conduct, and will communicate reasons for moderation
+decisions when appropriate.
+
+## Scope
+
+This Code of Conduct applies within all community spaces, and also applies when
+an individual is officially representing the community in public spaces.
+Examples of representing our community include using an official email address,
+posting via an official social media account, or acting as an appointed
+representative at an online or offline event.
+
+## Enforcement
+
+Instances of abusive, harassing, or otherwise unacceptable behavior may be
+reported to the community leaders responsible for enforcement at
+[[email protected]](mailto:[email protected]).
+All complaints will be reviewed and investigated promptly and fairly.
+
+All community leaders are obligated to respect the privacy and security of the
+reporter of any incident.
+
+## Enforcement Guidelines
+
+Community leaders will follow these Community Impact Guidelines in determining
+the consequences for any action they deem in violation of this Code of Conduct:
+
+### 1. Correction
+
+**Community Impact**: Use of inappropriate language or other behavior deemed
+unprofessional or unwelcome in the community.
+
+**Consequence**: A private, written warning from community leaders, providing
+clarity around the nature of the violation and an explanation of why the
+behavior was inappropriate. A public apology may be requested.
+
+### 2. Warning
+
+**Community Impact**: A violation through a single incident or series of
+actions.
+
+**Consequence**: A warning with consequences for continued behavior. No
+interaction with the people involved, including unsolicited interaction with
+those enforcing the Code of Conduct, for a specified period of time. This
+includes avoiding interactions in community spaces as well as external channels
+like social media. Violating these terms may lead to a temporary or permanent
+ban.
+
+### 3. Temporary Ban
+
+**Community Impact**: A serious violation of community standards, including
+sustained inappropriate behavior.
+
+**Consequence**: A temporary ban from any sort of interaction or public
+communication with the community for a specified period of time. No public or
+private interaction with the people involved, including unsolicited interaction
+with those enforcing the Code of Conduct, is allowed during this period.
+Violating these terms may lead to a permanent ban.
+
+### 4. Permanent Ban
+
+**Community Impact**: Demonstrating a pattern of violation of community
+standards, including sustained inappropriate behavior, harassment of an
+individual, or aggression toward or disparagement of classes of individuals.
+
+**Consequence**: A permanent ban from any sort of public interaction within the
+community.
+
+## Attribution
+
+This Code of Conduct is adapted from the [Contributor Covenant][homepage],
+version 2.1, available at
+[https://www.contributor-covenant.org/version/2/1/code_of_conduct.html][v2.1].
+
+Community Impact Guidelines were inspired by
+[Mozilla's code of conduct enforcement ladder][Mozilla CoC].
+
+For answers to common questions about this code of conduct, see the FAQ at
+[https://www.contributor-covenant.org/faq][FAQ]. Translations are available at
+[https://www.contributor-covenant.org/translations][translations].
+
+[homepage]: https://www.contributor-covenant.org
+[v2.1]: https://www.contributor-covenant.org/version/2/1/code_of_conduct.html
+[Mozilla CoC]: https://github.com/mozilla/diversity
+[FAQ]: https://www.contributor-covenant.org/faq
+[translations]: https://www.contributor-covenant.org/translations
+

jenkins/spack/pytest.ini

@@ -4,7 +4,7 @@ markers =
     slow_tests: mark test as slow.
     datatest: test depending on serialized data generated by a full model run
     with_netcdf: test depending on a compatible version of netCDF4
-addopts = -p icon4py.model.common.test_utils.pytest_config
+addopts = -p icon4py.model.testing.pytest_config
 testpaths = tools/tests/f2ser
             tools/tests/icon4pygen
             tools/tests/liskov

model/README.md

@@ -1,5 +1,7 @@
 # ICON4Py Model
 
+[![Nox](https://img.shields.io/badge/%F0%9F%A6%8A-Nox-D85E00.svg)](https://github.com/wntrblm/nox)
+
 This folder contains Python implementations for multiple ICON components.
 
 It includes the following packages: