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BulykLab

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  1. MEDEA MEDEA Public

    MEDEA identifies lineage-specifying transcription factors (TFs) from chromatin accessibility assays

    Python 5

  2. PU1-colocalization-manuscript PU1-colocalization-manuscript Public

    Code for generating figures for the manuscript

    R 3

  3. PU1-colocalization-analysis PU1-colocalization-analysis Public

    Code for performing colocalization analysis in Jeong and Bulyk (2023)

    Shell 1

  4. PADIT-seq PADIT-seq Public

    1

  5. RBCSNPs_2020 RBCSNPs_2020 Public

    This GitHub repository contains the code (Python, R) and data files needed to support the PBM-related analyses in "Common Variants in Signaling Transcription Factor Binding Sites Drive the Majority…

    Jupyter Notebook

  6. universal_PBM_analysis universal_PBM_analysis Public

    Guide to running PBM analysis on ERISTWO

    Perl

Repositories

Showing 7 of 7 repositories
  • IMD-colocalization-manuscript-figures Public

    Code and data for generating figures of Jeong and Bulyk

    BulykLab/IMD-colocalization-manuscript-figures’s past year of commit activity
    R 0 MIT 0 0 0 Updated Mar 27, 2024
  • PADIT-seq Public
    BulykLab/PADIT-seq’s past year of commit activity
    1 0 0 0 Updated Mar 5, 2024
  • universal_PBM_analysis Public

    Guide to running PBM analysis on ERISTWO

    BulykLab/universal_PBM_analysis’s past year of commit activity
    Perl 0 0 0 0 Updated Jan 15, 2024
  • PU1-colocalization-analysis Public

    Code for performing colocalization analysis in Jeong and Bulyk (2023)

    BulykLab/PU1-colocalization-analysis’s past year of commit activity
    Shell 1 MIT 0 0 0 Updated Sep 12, 2023
  • PU1-colocalization-manuscript Public

    Code for generating figures for the manuscript

    BulykLab/PU1-colocalization-manuscript’s past year of commit activity
    R 3 MIT 0 0 0 Updated Aug 18, 2023
  • RBCSNPs_2020 Public

    This GitHub repository contains the code (Python, R) and data files needed to support the PBM-related analyses in "Common Variants in Signaling Transcription Factor Binding Sites Drive the Majority of Red Blood Cell Traits" (Choudhuri*, Trompouki*, Abraham* et al., accepted (*equal contributions)).

    BulykLab/RBCSNPs_2020’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Sep 3, 2020
  • MEDEA Public

    MEDEA identifies lineage-specifying transcription factors (TFs) from chromatin accessibility assays

    BulykLab/MEDEA’s past year of commit activity
    Python 5 MIT 0 0 0 Updated May 27, 2020

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