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[Bug]No neighborhood Data in h5ad-files? #210

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albert180 opened this issue Aug 9, 2023 · 1 comment
Open

[Bug]No neighborhood Data in h5ad-files? #210

albert180 opened this issue Aug 9, 2023 · 1 comment
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@albert180
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albert180 commented Aug 9, 2023 •
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Hi, when exploring the .h5ad-file generated by
steinbock export anndata --intensities intensities --data regionprops --neighbors neighbors -o objects.h5ad
I've noticed that it doesn't contain any neighborhood-data. There exists a neighbors folder generated by Steinbock, and when using the read_steinbock()-function of imcRtools, the neighborhood-Data is included correctly in the SPE.
grafik
@jwindhager
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I've also reported this here: #196

@jwindhager jwindhager added the duplicate This issue or pull request already exists label Aug 9, 2023
@Milad4849 Milad4849 mentioned this issue Dec 13, 2023
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Milad4849 added a commit that referenced this issue Dec 13, 2023
@Milad4849
Fixed no neighborhood data in h5ad #210
cb0cbd2
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@jwindhager @albert180