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Fixes from Juelich jureca deployment #545

Merged
merged 43 commits into from
Apr 6, 2020
Merged

Fixes from Juelich jureca deployment #545

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ff0428c
Fixes from Juelich jureca deployment
pramodk Oct 9, 2019
1e3f907
Fixes from Jureca deployment
pramodk Oct 17, 2019
4ba8e85
enable libxslt as bluepy fails to load on booster partition
pramodk Oct 17, 2019
a6d4294
enable libxslt module as its required at runtime in LD_LIBRARY_PATH f…
pramodk Oct 30, 2019
a2f074b
Merge branch 'develop' into pr/juelich-fixes
pramodk Oct 30, 2019
19d1959
Merge branch 'pr/juelich-fixes' into pr/juelich-update
pramodk Oct 30, 2019
c75d550
revert changes to spack modules.yml
pramodk Oct 30, 2019
68c8911
Merge branch 'develop' into pr/juelich-update
pramodk Oct 30, 2019
74be7d1
Merge branch 'develop' into pr/juelich-update
pramodk Feb 24, 2020
0d4f3fa
Add python 3 to system paths
Feb 24, 2020
5dd2d41
Remove / from module suffix (consistent with booster)
Feb 25, 2020
0632c53
Add new neurodamus-core with 2.9.3
pramodk Feb 25, 2020
e4647be
* Add intel-mpi as default mpi provider
Mar 13, 2020
9062c7d
Add daint changes
Mar 13, 2020
645c253
Merge daint and julich branches
Mar 24, 2020
d30fc08
Merge branch 'develop' into pr/juelich-update
Mar 24, 2020
2540843
Revert pandas version dependency in sonata-network reduction
Mar 24, 2020
6da8b67
Remove python3 suffix
Mar 24, 2020
145c946
Use external python3 packages in Jureca and Piz-Daint
Mar 25, 2020
88efd45
Add py-numpy as external package
Mar 25, 2020
846fa33
Add deployment installation scripts in daint and jureca
Mar 25, 2020
98a6e0c
Whitelist neuron serial/parallel in daint
Mar 25, 2020
01573a3
Jureca changes
Mar 26, 2020
c7e4ad3
Deployment scripts in jureca and daint
Mar 26, 2020
fa881fc
Added coreneuron knl variant to deployment script (jureca)
Mar 27, 2020
dec193a
py-sonata-network-reduction0.0.6
Mar 28, 2020
8dd4ac6
zeromq: build with IntelⓇ in external packages.
matz-e Mar 30, 2020
ca33c07
zeromq: create IntelⓇ section in externals.
matz-e Mar 30, 2020
6372ca1
deploy: name external IntelⓇ section right.
matz-e Mar 30, 2020
2a422e0
Merge remote-tracking branch 'aleksei/py-sonata-network-reduction0.0.…
Mar 30, 2020
09997bb
Add configure step for py-zmq to explicitly pass zeromq directory
pramodk Mar 30, 2020
029eed5
flake-8
pramodk Mar 30, 2020
c44ac75
Bump py-zmq to be able to re-build py-zmq
pramodk Mar 30, 2020
3dbd964
Merge branch 'deploy/external-intel-zmq' into pr/juelich-update
pramodk Mar 30, 2020
5929508
Removing py-pandas and py-matplotlib from external
Mar 31, 2020
c3fcadb
Add missing neuron%intel dependencies
pramodk Mar 31, 2020
39dbadd
Remove python packages from external in Jureca
Mar 31, 2020
144c8fb
Bug fix for importing neuron+mpi compiled mechanism library
pramodk Mar 31, 2020
c4996bd
Deploy latest efel as well
pramodk Mar 31, 2020
d45b2ab
Address review comments
Apr 3, 2020
1ae6b5a
Keep neurodamus-core 2.9.2 as preferred version
Apr 3, 2020
e83bab2
Fixes for external systems (Jureca & Piz-Daint deployment)
Apr 3, 2020
e895dfa
Merge branch 'develop' into pr/juelich-update
pramodk Apr 3, 2020
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1 change: 1 addition & 0 deletions sysconfig/jureca-booster/modules.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@ modules:
'+profile': 'profile'
'^coreneuron+knl': 'knl'
'neuron~mpi': 'serial'
'^[email protected]': 'python3'
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filter:
environment_blacklist: ['CPATH', 'LIBRARY_PATH']
naming_scheme: '${PACKAGE}/${VERSION}'
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3 changes: 2 additions & 1 deletion sysconfig/jureca-booster/packages.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -110,7 +110,8 @@ packages:
python:
paths:
[email protected]: /usr/local/software/jurecabooster/Stages/2019a/software/Python/2.7.16-GCCcore-8.3.0
version: [2.7.15]
[email protected]: /usr/local/software/jurecabooster/Stages/2019a/software/Python/3.6.8-GCCcore-8.3.0
version: [2.7.15, 3.6.8]
buildable: False
py-cython:
paths:
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1 change: 1 addition & 0 deletions sysconfig/jureca-cluster/modules.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -27,6 +27,7 @@ modules:
'+profile': 'profile'
'^coreneuron+knl': 'knl'
'neuron~mpi': '/serial'
'^[email protected]': 'python3'
filter:
environment_blacklist: ['CPATH', 'LIBRARY_PATH']
naming_scheme: '${PACKAGE}/${VERSION}'
Expand Down
3 changes: 2 additions & 1 deletion sysconfig/jureca-cluster/packages.yaml
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Original file line number Diff line number Diff line change
Expand Up @@ -90,7 +90,8 @@ packages:
python:
paths:
[email protected]: /usr/local/software/jureca/Stages/2019a/software/Python/2.7.16-GCCcore-8.3.0
version: [2.7.15]
[email protected]: /usr/local/software/jureca/Stages/2019a/software/Python/3.6.8-GCCcore-8.3.0
version: [2.7.15, 3.6.8]
buildable: False
py-cython:
paths:
Expand Down