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Release/v3.0.0 #50

Merged
merged 29 commits into from
May 1, 2023
Merged

Release/v3.0.0 #50

merged 29 commits into from
May 1, 2023

Commits on Apr 20, 2023

  1. Merge branch 'master' into develop

    @CiaranOMara
    CiaranOMara committed Apr 20, 2023
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  2. Adjust focus of IntervalCollection element type 

    This commit makes the `IntervalCollection` element type generic, which is a breaking change.
    @CiaranOMara
    CiaranOMara committed Apr 20, 2023
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  3. Rename OverlapIterator fields

    @CiaranOMara
    CiaranOMara committed Apr 20, 2023
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Commits on Apr 28, 2023

  1. Remove focus from Interval metadata 

    Develops `intervaltype` methods.
    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  2. Test shorthand and longhand bulk insertion

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  3. Un-Shadow IntervalTrees.Interval type 

    - Rename `Interval` to `GenomicInterval`.
- Rename `IntervalCollection` to `GenomicIntervalCollection`.
    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  4. Subtype from AbstractGenomicInterval type 

    Allow users to develop their own custom concrete types.
    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  5. Use AbstractGenomicInterval type

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  6. Add default AbstractGenomicInterval equivalency check

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  7. Add isless method for AbstractGenomicInterval

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  8. Add show method for AbstractGenomicInterval

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  9. Test GenomicIntervalCollection constructors

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  10. Shortcut with dispatch

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  11. Add GenomicPosition type

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  12. Add metadata shortcut

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  13. Subtype from AbstractGenomicCollection type

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  14. Add IterableGenomicCollection helper

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  15. Add eltype method for generators

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  16. Add groupname methods

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  17. Use groupname instead of seqname

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  18. Expand precedes logic and test

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  19. Add baseintervaltype methods

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  20. Add metadatatype methods

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  21. Increment version

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  22. Increment compatibility

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  23. Move doctest to Documentation workflow

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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  24. Update Documentation workflow

    @CiaranOMara
    CiaranOMara committed Apr 28, 2023
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Commits on Apr 29, 2023

  1. Benchmark fixes

    @CiaranOMara
    CiaranOMara committed Apr 29, 2023
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  2. Apply suggestions from code review 

    Co-authored-by: Kevin Bonham <[email protected]>
    @CiaranOMara @kescobo
    CiaranOMara and kescobo authored Apr 29, 2023
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