Release/v3.0.0 #50

CiaranOMara · 2023-04-20T15:43:13Z

This PR refactors GenomicFeatures to make use of abstract types.

This PR contains the following breaking changes.

The Interval type is renamed GenomicInterval and now subtypes AbstractGenomicInterval.
The IntervalCollection is now GenomicIntervalCollection, and the element type of the collection is now the AbstractGenomicInterval instead of the interval's metadata type.
Intervals are now grouped by the more generic groupname instead of seqname.

This commit makes the `IntervalCollection` element type generic, which is a breaking change.

github-actions · 2023-04-20T15:47:31Z

Benchmark result

Judge result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmarks:
- Target: 20 Apr 2023 - 15:46
- Baseline: 20 Apr 2023 - 15:47
Package commits:
- Target: 5dffa7
- Baseline: b99efc
Julia commits:
- Target: 17cfb8
- Baseline: 17cfb8
Julia command flags:
- Target: None
- Baseline: None
Environment variables:
- Target: None
- Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID	time ratio	memory ratio
`["insert", "type"]`	2.51 (5%) ❌	1.77 (1%) ❌

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["insert"]

Julia versioninfo

Target

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1035-azure #42-Ubuntu SMP Tue Feb 28 19:41:23 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz: 
              speed         user         nice          sys         idle          irq
       #1  2593 MHz       1460 s          0 s        245 s       1071 s          0 s
       #2  2593 MHz        488 s          0 s        141 s       2134 s          0 s
  Memory: 6.781211853027344 GB (5241.19140625 MB free)
  Uptime: 281.84 sec
  Load Avg:  1.07  0.82  0.38
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512)
  Threads: 1 on 2 virtual cores

Baseline

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1035-azure #42-Ubuntu SMP Tue Feb 28 19:41:23 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz: 
              speed         user         nice          sys         idle          irq
       #1  2593 MHz       1739 s          0 s        264 s       1293 s          0 s
       #2  2593 MHz        681 s          0 s        180 s       2422 s          0 s
  Memory: 6.781211853027344 GB (5251.9609375 MB free)
  Uptime: 333.89 sec
  Load Avg:  1.03  0.85  0.42
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512)
  Threads: 1 on 2 virtual cores

Target result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmark: 20 Apr 2023 - 15:46
Package commit: 5dffa7
Julia commit: 17cfb8
Julia command flags: None
Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID	time	GC time	memory	allocations
`["accessors", "Vector{GenomicInterval{Int64}}", "groupname"]`	3.063 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "leftposition"]`	1.300 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "metadata"]`	1.300 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "rightposition"]`	1.310 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "strand"]`	953.885 ns (5%)		1.06 KiB (1%)	1
`["eachoverlap", "GenomicIntervalCollection{GenomicInterval{Int64}}, GenomicIntervalCollection{GenomicInterval{Int64}}"]`	35.295 ms (5%)	2.495 ms	104.03 MiB (1%)	589881
`["eachoverlap", "GenomicIntervalCollection{GenomicInterval{Int64}}, Vector{GenomicInterval{Int64}}"]`	115.012 ms (5%)	25.014 ms	232.40 MiB (1%)	2061663
`["eachoverlap", "Vector{GenomicInterval{Int64}}, GenomicIntervalCollection{GenomicInterval{Int64}}"]`	29.767 ms (5%)		86.02 MiB (1%)	294939
`["eachoverlap", "Vector{GenomicInterval{Int64}}, Vector{GenomicInterval{Int64}}"]`	108.184 ms (5%)	17.664 ms	215.91 MiB (1%)	2061659
`["insert", "shorthand"]`	37.901 μs (5%)		76.48 KiB (1%)	96
`["insert", "type"]`	99.203 μs (5%)		135.28 KiB (1%)	100
`["push", "Vector{GenomicInterval{Int64}}"]`	238.906 μs (5%)		105.91 KiB (1%)	148
`["sort", "Vector{GenomicInterval{Int64}}"]`	180.905 μs (5%)		58.80 KiB (1%)	4

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["accessors", "Vector{GenomicInterval{Int64}}"]
["eachoverlap"]
["insert"]
["push"]
["sort"]

Julia versioninfo

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1035-azure #42-Ubuntu SMP Tue Feb 28 19:41:23 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz: 
              speed         user         nice          sys         idle          irq
       #1  2593 MHz       1460 s          0 s        245 s       1071 s          0 s
       #2  2593 MHz        488 s          0 s        141 s       2134 s          0 s
  Memory: 6.781211853027344 GB (5241.19140625 MB free)
  Uptime: 281.84 sec
  Load Avg:  1.07  0.82  0.38
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512)
  Threads: 1 on 2 virtual cores

Baseline result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmark: 20 Apr 2023 - 15:47
Package commit: b99efc
Julia commit: 17cfb8
Julia command flags: None
Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID	time	GC time	memory	allocations
`["accessors", "Vector{Interval{Int64}}", "leftposition"]`	1.100 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "metadata"]`	1.200 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "rightposition"]`	1.200 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "seqname"]`	2.500 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "strand"]`	900.000 ns (5%)		1.06 KiB (1%)	1
`["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]`	35.406 ms (5%)	2.344 ms	104.03 MiB (1%)	589881
`["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]`	115.445 ms (5%)	19.703 ms	227.87 MiB (1%)	2061663
`["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]`	29.886 ms (5%)		86.02 MiB (1%)	294939
`["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]`	110.280 ms (5%)	21.296 ms	215.91 MiB (1%)	2061659
`["insert", "shorthand"]`	39.600 μs (5%)		76.48 KiB (1%)	96
`["insert", "type"]`	39.601 μs (5%)		76.48 KiB (1%)	96
`["push", "Vector{Interval{Int64}}"]`	246.507 μs (5%)		105.91 KiB (1%)	148
`["sort", "Vector{Interval{Int64}}"]`	185.105 μs (5%)		58.80 KiB (1%)	4

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["accessors", "Vector{Interval{Int64}}"]
["eachoverlap"]
["insert"]
["push"]
["sort"]

Julia versioninfo

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1035-azure #42-Ubuntu SMP Tue Feb 28 19:41:23 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz: 
              speed         user         nice          sys         idle          irq
       #1  2593 MHz       1739 s          0 s        264 s       1293 s          0 s
       #2  2593 MHz        681 s          0 s        180 s       2422 s          0 s
  Memory: 6.781211853027344 GB (5251.9609375 MB free)
  Uptime: 333.89 sec
  Load Avg:  1.03  0.85  0.42
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, skylake-avx512)
  Threads: 1 on 2 virtual cores

Runtime information

Runtime Info
BLAS #threads	1
`BLAS.vendor()`	`openblas64`
`Sys.CPU_THREADS`	2

lscpu output:

Architecture:                    x86_64
CPU op-mode(s):                  32-bit, 64-bit
Address sizes:                   46 bits physical, 48 bits virtual
Byte Order:                      Little Endian
CPU(s):                          2
On-line CPU(s) list:             0,1
Vendor ID:                       GenuineIntel
Model name:                      Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz
CPU family:                      6
Model:                           85
Thread(s) per core:              1
Core(s) per socket:              2
Socket(s):                       1
Stepping:                        7
BogoMIPS:                        5187.81
Flags:                           fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm avx512f avx512dq rdseed adx smap clflushopt avx512cd avx512bw avx512vl xsaveopt xsavec xsaves md_clear
Hypervisor vendor:               Microsoft
Virtualization type:             full
L1d cache:                       64 KiB (2 instances)
L1i cache:                       64 KiB (2 instances)
L2 cache:                        2 MiB (2 instances)
L3 cache:                        35.8 MiB (1 instance)
NUMA node(s):                    1
NUMA node0 CPU(s):               0,1
Vulnerability Itlb multihit:     KVM: Mitigation: VMX unsupported
Vulnerability L1tf:              Mitigation; PTE Inversion
Vulnerability Mds:               Mitigation; Clear CPU buffers; SMT Host state unknown
Vulnerability Meltdown:          Mitigation; PTI
Vulnerability Mmio stale data:   Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown
Vulnerability Retbleed:          Vulnerable
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1:        Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:        Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds:             Not affected
Vulnerability Tsx async abort:   Mitigation; Clear CPU buffers; SMT Host state unknown

Cpu Property	Value
Brand	Intel(R) Xeon(R) Platinum 8272CL CPU @ 2.60GHz
Vendor	:Intel
Architecture	:Skylake
Model	Family: 0x06, Model: 0x55, Stepping: 0x07, Type: 0x00
Cores	2 physical cores, 2 logical cores (on executing CPU)
	No Hyperthreading hardware capability detected
Clock Frequencies	Not supported by CPU
Data Cache	Level 1:3 : (32, 1024, 36608) kbytes
	64 byte cache line size
Address Size	48 bits virtual, 46 bits physical
SIMD	512 bit = 64 byte max. SIMD vector size
Time Stamp Counter	TSC is accessible via `rdtsc`
	TSC increased at every clock cycle (non-invariant TSC)
Perf. Monitoring	Performance Monitoring Counters (PMC) are not supported
Hypervisor	Yes, Microsoft

kescobo

I'm not going to pretend I understand the scope of these changes. I can do a more detailed review if you think that would be helpful, but I trust you to make good decisions here.

My only high-level comment is that all doctests should probably pass (or be removed) at this stage before merging. No reason to have our first post-1.0 docs be instantly outdated 😉

CiaranOMara · 2023-04-27T12:58:25Z

@kescobo, this PR is now ready for review again. I think I addressed your comment and tidied up a few loose ends.

kescobo

I left a bunch of comments, but the vast majority amount to style preferences, and I do not feel strongly enough to consider them blocking. There is one spot where it looks like a T didn't get correctly changed to I (or vice versa), but that's the only part of this review that I would insist on.

The big style ones that show up in a few places look as if you were copying the previous style, but I think should be changed are

A bunch of block that have the struture if ... return X; end; if ... return Y; end; return Z that I think should either be if/elseif/else, or else use short-circuiting && return X
A bunch of function definitions that are are just returning something that I think could be written with foo() = X rather than function foo(); return X; end

In both cases, I commented on one or two examples, but there were many more that I didn't flag. If you do want to make these changes but don't want to put in the extra tedious effort, I can do them as a separate PR - neither of them should change the functionality, so they can safely be done after v3.0 is tagged.

src/GenomicFeatures.jl

src/coverage.jl

src/interval.jl

Develops `intervaltype` methods.

- Rename `Interval` to `GenomicInterval`. - Rename `IntervalCollection` to `GenomicIntervalCollection`.

Allow users to develop their own custom concrete types.

github-actions · 2023-04-29T02:34:47Z

Benchmark result

Judge result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmarks:
- Target: 29 Apr 2023 - 02:33
- Baseline: 29 Apr 2023 - 02:34
Package commits:
- Target: 464597
- Baseline: b99efc
Julia commits:
- Target: 17cfb8
- Baseline: 17cfb8
Julia command flags:
- Target: None
- Baseline: None
Environment variables:
- Target: None
- Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID	time ratio	memory ratio
`["insert", "shorthand"]`	0.80 (5%) ✅	1.00 (1%)
`["insert", "type"]`	2.13 (5%) ❌	1.77 (1%) ❌

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["insert"]

Julia versioninfo

Target

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1036-azure #43-Ubuntu SMP Wed Mar 29 16:11:05 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz        701 s          0 s        213 s       2490 s          0 s
       #2  2294 MHz       1534 s          0 s        224 s       1606 s          0 s
  Memory: 6.781208038330078 GB (5320.34375 MB free)
  Uptime: 346.24 sec
  Load Avg:  1.1  0.78  0.37
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Baseline

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1036-azure #43-Ubuntu SMP Wed Mar 29 16:11:05 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz        743 s          0 s        217 s       3004 s          0 s
       #2  2294 MHz       2010 s          0 s        272 s       1644 s          0 s
  Memory: 6.781208038330078 GB (5218.80078125 MB free)
  Uptime: 402.32 sec
  Load Avg:  1.07  0.84  0.42
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Target result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmark: 29 Apr 2023 - 2:33
Package commit: 464597
Julia commit: 17cfb8
Julia command flags: None
Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID	time	GC time	memory	allocations
`["accessors", "Vector{GenomicInterval{Int64}}", "groupname"]`	1.550 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "leftposition"]`	1.110 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "metadata"]`	1.100 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "rightposition"]`	1.110 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "strand"]`	835.078 ns (5%)		1.06 KiB (1%)	1
`["eachoverlap", "GenomicIntervalCollection{GenomicInterval{Int64}}, GenomicIntervalCollection{GenomicInterval{Int64}}"]`	38.620 ms (5%)	3.609 ms	104.03 MiB (1%)	589881
`["eachoverlap", "GenomicIntervalCollection{GenomicInterval{Int64}}, Vector{GenomicInterval{Int64}}"]`	122.732 ms (5%)	22.415 ms	232.40 MiB (1%)	2061663
`["eachoverlap", "Vector{GenomicInterval{Int64}}, GenomicIntervalCollection{GenomicInterval{Int64}}"]`	35.726 ms (5%)	4.306 ms	86.02 MiB (1%)	294939
`["eachoverlap", "Vector{GenomicInterval{Int64}}, Vector{GenomicInterval{Int64}}"]`	124.712 ms (5%)	25.562 ms	215.91 MiB (1%)	2061659
`["insert", "shorthand"]`	33.301 μs (5%)		76.48 KiB (1%)	96
`["insert", "type"]`	86.101 μs (5%)		135.28 KiB (1%)	100
`["push", "Vector{GenomicInterval{Int64}}"]`	214.800 μs (5%)		105.91 KiB (1%)	148
`["sort", "Vector{GenomicInterval{Int64}}"]`	155.900 μs (5%)		58.80 KiB (1%)	4

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["accessors", "Vector{GenomicInterval{Int64}}"]
["eachoverlap"]
["insert"]
["push"]
["sort"]

Julia versioninfo

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1036-azure #43-Ubuntu SMP Wed Mar 29 16:11:05 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz        701 s          0 s        213 s       2490 s          0 s
       #2  2294 MHz       1534 s          0 s        224 s       1606 s          0 s
  Memory: 6.781208038330078 GB (5320.34375 MB free)
  Uptime: 346.24 sec
  Load Avg:  1.1  0.78  0.37
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Baseline result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmark: 29 Apr 2023 - 2:34
Package commit: b99efc
Julia commit: 17cfb8
Julia command flags: None
Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID	time	GC time	memory	allocations
`["accessors", "Vector{Interval{Int64}}", "leftposition"]`	1.100 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "metadata"]`	1.200 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "rightposition"]`	1.200 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "seqname"]`	1.500 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "strand"]`	800.000 ns (5%)		1.06 KiB (1%)	1
`["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]`	41.648 ms (5%)	3.238 ms	104.03 MiB (1%)	589881
`["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]`	137.419 ms (5%)	24.603 ms	227.87 MiB (1%)	2061663
`["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]`	37.710 ms (5%)	4.445 ms	86.02 MiB (1%)	294939
`["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]`	118.223 ms (5%)	14.144 ms	215.91 MiB (1%)	2061659
`["insert", "shorthand"]`	41.400 μs (5%)		76.48 KiB (1%)	96
`["insert", "type"]`	40.500 μs (5%)		76.48 KiB (1%)	96
`["push", "Vector{Interval{Int64}}"]`	217.001 μs (5%)		105.91 KiB (1%)	148
`["sort", "Vector{Interval{Int64}}"]`	155.201 μs (5%)		58.80 KiB (1%)	4

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["accessors", "Vector{Interval{Int64}}"]
["eachoverlap"]
["insert"]
["push"]
["sort"]

Julia versioninfo

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1036-azure #43-Ubuntu SMP Wed Mar 29 16:11:05 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz        743 s          0 s        217 s       3004 s          0 s
       #2  2294 MHz       2010 s          0 s        272 s       1644 s          0 s
  Memory: 6.781208038330078 GB (5218.80078125 MB free)
  Uptime: 402.32 sec
  Load Avg:  1.07  0.84  0.42
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Runtime information

Runtime Info
BLAS #threads	1
`BLAS.vendor()`	`openblas64`
`Sys.CPU_THREADS`	2

lscpu output:

Architecture:                    x86_64
CPU op-mode(s):                  32-bit, 64-bit
Address sizes:                   46 bits physical, 48 bits virtual
Byte Order:                      Little Endian
CPU(s):                          2
On-line CPU(s) list:             0,1
Vendor ID:                       GenuineIntel
Model name:                      Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz
CPU family:                      6
Model:                           79
Thread(s) per core:              1
Core(s) per socket:              2
Socket(s):                       1
Stepping:                        1
BogoMIPS:                        4589.37
Flags:                           fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear
Hypervisor vendor:               Microsoft
Virtualization type:             full
L1d cache:                       64 KiB (2 instances)
L1i cache:                       64 KiB (2 instances)
L2 cache:                        512 KiB (2 instances)
L3 cache:                        50 MiB (1 instance)
NUMA node(s):                    1
NUMA node0 CPU(s):               0,1
Vulnerability Itlb multihit:     KVM: Mitigation: VMX unsupported
Vulnerability L1tf:              Mitigation; PTE Inversion
Vulnerability Mds:               Mitigation; Clear CPU buffers; SMT Host state unknown
Vulnerability Meltdown:          Mitigation; PTI
Vulnerability Mmio stale data:   Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown
Vulnerability Retbleed:          Not affected
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1:        Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:        Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds:             Not affected
Vulnerability Tsx async abort:   Mitigation; Clear CPU buffers; SMT Host state unknown

Cpu Property	Value
Brand	Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz
Vendor	:Intel
Architecture	:Broadwell
Model	Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00
Cores	2 physical cores, 2 logical cores (on executing CPU)
	No Hyperthreading hardware capability detected
Clock Frequencies	Not supported by CPU
Data Cache	Level 1:3 : (32, 256, 51200) kbytes
	64 byte cache line size
Address Size	48 bits virtual, 46 bits physical
SIMD	256 bit = 32 byte max. SIMD vector size
Time Stamp Counter	TSC is accessible via `rdtsc`
	TSC increased at every clock cycle (non-invariant TSC)
Perf. Monitoring	Performance Monitoring Counters (PMC) are not supported
Hypervisor	Yes, Microsoft

Co-authored-by: Kevin Bonham <[email protected]>

github-actions · 2023-04-29T03:00:36Z

Benchmark result

Judge result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmarks:
- Target: 29 Apr 2023 - 02:59
- Baseline: 29 Apr 2023 - 03:00
Package commits:
- Target: 8ddc14
- Baseline: b99efc
Julia commits:
- Target: 17cfb8
- Baseline: 17cfb8
Julia command flags:
- Target: None
- Baseline: None
Environment variables:
- Target: None
- Baseline: None

Results

A ratio greater than 1.0 denotes a possible regression (marked with ❌), while a ratio less
than 1.0 denotes a possible improvement (marked with ✅). Only significant results - results
that indicate possible regressions or improvements - are shown below (thus, an empty table means that all
benchmark results remained invariant between builds).

ID	time ratio	memory ratio
`["insert", "shorthand"]`	0.94 (5%) ✅	1.00 (1%)
`["insert", "type"]`	2.50 (5%) ❌	1.77 (1%) ❌

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["insert"]

Julia versioninfo

Target

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1036-azure #43-Ubuntu SMP Wed Mar 29 16:11:05 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz       1679 s          0 s        279 s       2019 s          0 s
       #2  2294 MHz        799 s          0 s        190 s       2966 s          0 s
  Memory: 6.781208038330078 GB (5298.90625 MB free)
  Uptime: 404.47 sec
  Load Avg:  1.04  0.85  0.43
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Baseline

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1036-azure #43-Ubuntu SMP Wed Mar 29 16:11:05 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz       1974 s          0 s        287 s       2326 s          0 s
       #2  2294 MHz       1074 s          0 s        230 s       3260 s          0 s
  Memory: 6.781208038330078 GB (5207.24609375 MB free)
  Uptime: 465.64 sec
  Load Avg:  1.01  0.88  0.47
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Target result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmark: 29 Apr 2023 - 2:59
Package commit: 8ddc14
Julia commit: 17cfb8
Julia command flags: None
Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID	time	GC time	memory	allocations
`["accessors", "Vector{GenomicInterval{Int64}}", "groupname"]`	2.250 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "leftposition"]`	1.470 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "metadata"]`	1.440 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "rightposition"]`	1.370 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{GenomicInterval{Int64}}", "strand"]`	941.176 ns (5%)		1.06 KiB (1%)	1
`["eachoverlap", "GenomicIntervalCollection{GenomicInterval{Int64}}, GenomicIntervalCollection{GenomicInterval{Int64}}"]`	42.809 ms (5%)	3.192 ms	104.03 MiB (1%)	589881
`["eachoverlap", "GenomicIntervalCollection{GenomicInterval{Int64}}, Vector{GenomicInterval{Int64}}"]`	145.573 ms (5%)	26.765 ms	232.40 MiB (1%)	2061663
`["eachoverlap", "Vector{GenomicInterval{Int64}}, GenomicIntervalCollection{GenomicInterval{Int64}}"]`	40.677 ms (5%)	4.970 ms	86.02 MiB (1%)	294939
`["eachoverlap", "Vector{GenomicInterval{Int64}}, Vector{GenomicInterval{Int64}}"]`	132.675 ms (5%)	15.228 ms	215.91 MiB (1%)	2061659
`["insert", "shorthand"]`	43.700 μs (5%)		76.48 KiB (1%)	96
`["insert", "type"]`	113.098 μs (5%)		135.28 KiB (1%)	100
`["push", "Vector{GenomicInterval{Int64}}"]`	244.096 μs (5%)		105.91 KiB (1%)	148
`["sort", "Vector{GenomicInterval{Int64}}"]`	185.197 μs (5%)		58.80 KiB (1%)	4

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["accessors", "Vector{GenomicInterval{Int64}}"]
["eachoverlap"]
["insert"]
["push"]
["sort"]

Julia versioninfo

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1036-azure #43-Ubuntu SMP Wed Mar 29 16:11:05 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz       1679 s          0 s        279 s       2019 s          0 s
       #2  2294 MHz        799 s          0 s        190 s       2966 s          0 s
  Memory: 6.781208038330078 GB (5298.90625 MB free)
  Uptime: 404.47 sec
  Load Avg:  1.04  0.85  0.43
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Baseline result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Time of benchmark: 29 Apr 2023 - 3:0
Package commit: b99efc
Julia commit: 17cfb8
Julia command flags: None
Environment variables: None

Results

Below is a table of this job's results, obtained by running the benchmarks.
The values listed in the ID column have the structure [parent_group, child_group, ..., key], and can be used to
index into the BaseBenchmarks suite to retrieve the corresponding benchmarks.
The percentages accompanying time and memory values in the below table are noise tolerances. The "true"
time/memory value for a given benchmark is expected to fall within this percentage of the reported value.
An empty cell means that the value was zero.

ID	time	GC time	memory	allocations
`["accessors", "Vector{Interval{Int64}}", "leftposition"]`	1.399 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "metadata"]`	1.499 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "rightposition"]`	1.599 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "seqname"]`	1.900 μs (5%)		7.94 KiB (1%)	1
`["accessors", "Vector{Interval{Int64}}", "strand"]`	999.000 ns (5%)		1.06 KiB (1%)	1
`["eachoverlap", "IntervalCollection{Int64}, IntervalCollection{Int64}"]`	44.747 ms (5%)	3.438 ms	104.03 MiB (1%)	589881
`["eachoverlap", "IntervalCollection{Int64}, Vector{Interval{Int64}}"]`	153.520 ms (5%)	27.342 ms	227.87 MiB (1%)	2061663
`["eachoverlap", "Vector{Interval{Int64}}, IntervalCollection{Int64}"]`	39.986 ms (5%)	4.446 ms	86.02 MiB (1%)	294939
`["eachoverlap", "Vector{Interval{Int64}}, Vector{Interval{Int64}}"]`	156.714 ms (5%)	28.328 ms	215.91 MiB (1%)	2061659
`["insert", "shorthand"]`	46.499 μs (5%)		76.48 KiB (1%)	96
`["insert", "type"]`	45.299 μs (5%)		76.48 KiB (1%)	96
`["push", "Vector{Interval{Int64}}"]`	244.796 μs (5%)		105.91 KiB (1%)	148
`["sort", "Vector{Interval{Int64}}"]`	182.198 μs (5%)		58.80 KiB (1%)	4

Benchmark Group List

Here's a list of all the benchmark groups executed by this job:

["accessors", "Vector{Interval{Int64}}"]
["eachoverlap"]
["insert"]
["push"]
["sort"]

Julia versioninfo

Julia Version 1.8.5
Commit 17cfb8e65ea (2023-01-08 06:45 UTC)
Platform Info:
  OS: Linux (x86_64-linux-gnu)
      Ubuntu 22.04.2 LTS
  uname: Linux 5.15.0-1036-azure #43-Ubuntu SMP Wed Mar 29 16:11:05 UTC 2023 x86_64 x86_64
  CPU: Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz: 
              speed         user         nice          sys         idle          irq
       #1  2294 MHz       1974 s          0 s        287 s       2326 s          0 s
       #2  2294 MHz       1074 s          0 s        230 s       3260 s          0 s
  Memory: 6.781208038330078 GB (5207.24609375 MB free)
  Uptime: 465.64 sec
  Load Avg:  1.01  0.88  0.47
  WORD_SIZE: 64
  LIBM: libopenlibm
  LLVM: libLLVM-13.0.1 (ORCJIT, broadwell)
  Threads: 1 on 2 virtual cores

Runtime information

Runtime Info
BLAS #threads	1
`BLAS.vendor()`	`openblas64`
`Sys.CPU_THREADS`	2

lscpu output:

Architecture:                    x86_64
CPU op-mode(s):                  32-bit, 64-bit
Address sizes:                   46 bits physical, 48 bits virtual
Byte Order:                      Little Endian
CPU(s):                          2
On-line CPU(s) list:             0,1
Vendor ID:                       GenuineIntel
Model name:                      Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz
CPU family:                      6
Model:                           79
Thread(s) per core:              1
Core(s) per socket:              2
Socket(s):                       1
Stepping:                        1
BogoMIPS:                        4589.37
Flags:                           fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush mmx fxsr sse sse2 ss ht syscall nx pdpe1gb rdtscp lm constant_tsc rep_good nopl xtopology cpuid pni pclmulqdq ssse3 fma cx16 pcid sse4_1 sse4_2 movbe popcnt aes xsave avx f16c rdrand hypervisor lahf_lm abm 3dnowprefetch invpcid_single pti fsgsbase bmi1 hle avx2 smep bmi2 erms invpcid rtm rdseed adx smap xsaveopt md_clear
Hypervisor vendor:               Microsoft
Virtualization type:             full
L1d cache:                       64 KiB (2 instances)
L1i cache:                       64 KiB (2 instances)
L2 cache:                        512 KiB (2 instances)
L3 cache:                        50 MiB (1 instance)
NUMA node(s):                    1
NUMA node0 CPU(s):               0,1
Vulnerability Itlb multihit:     KVM: Mitigation: VMX unsupported
Vulnerability L1tf:              Mitigation; PTE Inversion
Vulnerability Mds:               Mitigation; Clear CPU buffers; SMT Host state unknown
Vulnerability Meltdown:          Mitigation; PTI
Vulnerability Mmio stale data:   Vulnerable: Clear CPU buffers attempted, no microcode; SMT Host state unknown
Vulnerability Retbleed:          Not affected
Vulnerability Spec store bypass: Vulnerable
Vulnerability Spectre v1:        Mitigation; usercopy/swapgs barriers and __user pointer sanitization
Vulnerability Spectre v2:        Mitigation; Retpolines, STIBP disabled, RSB filling, PBRSB-eIBRS Not affected
Vulnerability Srbds:             Not affected
Vulnerability Tsx async abort:   Mitigation; Clear CPU buffers; SMT Host state unknown

Cpu Property	Value
Brand	Intel(R) Xeon(R) CPU E5-2673 v4 @ 2.30GHz
Vendor	:Intel
Architecture	:Broadwell
Model	Family: 0x06, Model: 0x4f, Stepping: 0x01, Type: 0x00
Cores	2 physical cores, 2 logical cores (on executing CPU)
	No Hyperthreading hardware capability detected
Clock Frequencies	Not supported by CPU
Data Cache	Level 1:3 : (32, 256, 51200) kbytes
	64 byte cache line size
Address Size	48 bits virtual, 46 bits physical
SIMD	256 bit = 32 byte max. SIMD vector size
Time Stamp Counter	TSC is accessible via `rdtsc`
	TSC increased at every clock cycle (non-invariant TSC)
Perf. Monitoring	Performance Monitoring Counters (PMC) are not supported
Hypervisor	Yes, Microsoft

CiaranOMara · 2023-05-01T00:40:22Z

Thanks @kescobo.

CiaranOMara added 3 commits April 20, 2023 20:22

Merge branch 'master' into develop

8f49a18

Adjust focus of IntervalCollection element type

a4b7a7e

This commit makes the `IntervalCollection` element type generic, which is a breaking change.

Rename OverlapIterator fields

9351dca

CiaranOMara requested a review from a team April 20, 2023 15:43

kescobo reviewed Apr 21, 2023

View reviewed changes

CiaranOMara marked this pull request as draft April 24, 2023 09:39

CiaranOMara force-pushed the release/v3.0.0 branch from a9736a7 to 6e97f12 Compare April 27, 2023 11:21

CiaranOMara marked this pull request as ready for review April 27, 2023 12:58

kescobo requested changes Apr 27, 2023

View reviewed changes

CiaranOMara added 17 commits April 28, 2023 12:05

Remove focus from Interval metadata

c96a9df

Develops `intervaltype` methods.

Test shorthand and longhand bulk insertion

7c0fbaf

Un-Shadow IntervalTrees.Interval type

4da88a9

- Rename `Interval` to `GenomicInterval`. - Rename `IntervalCollection` to `GenomicIntervalCollection`.

Subtype from AbstractGenomicInterval type

b97e1c2

Allow users to develop their own custom concrete types.

Use AbstractGenomicInterval type

a874fe6

Add default AbstractGenomicInterval equivalency check

e1c088d

Add isless method for AbstractGenomicInterval

555d005

Add show method for AbstractGenomicInterval

c29b04f

Test GenomicIntervalCollection constructors

81f9781

Shortcut with dispatch

761a954

Add GenomicPosition type

4e65935

Add metadata shortcut

c589dae

Subtype from AbstractGenomicCollection type

46e596d

Add IterableGenomicCollection helper

857bf1d

Add eltype method for generators

798b6a1

Add groupname methods

01e7d65

Use groupname instead of seqname

8bd1a9d

CiaranOMara force-pushed the release/v3.0.0 branch from 6e97f12 to e24882b Compare April 28, 2023 03:27

Expand precedes logic and test

84c72f9

CiaranOMara added 6 commits April 28, 2023 13:36

Add baseintervaltype methods

ebcbe23

Add metadatatype methods

9a61115

Increment version

58db78e

Increment compatibility

4ed213f

Move doctest to Documentation workflow

14e23a2

Update Documentation workflow

097a253

CiaranOMara force-pushed the release/v3.0.0 branch from e24882b to 097a253 Compare April 28, 2023 03:37

kescobo previously approved these changes Apr 28, 2023

View reviewed changes

CiaranOMara dismissed kescobo’s stale review via 2ab63cc April 28, 2023 22:04

Benchmark fixes

91712bf

CiaranOMara force-pushed the release/v3.0.0 branch from 2ab63cc to 91712bf Compare April 29, 2023 02:30

Apply suggestions from code review

865d5a9

Co-authored-by: Kevin Bonham <[email protected]>

CiaranOMara merged commit 4f588de into master May 1, 2023

Release/v3.0.0 #50

Release/v3.0.0 #50

Conversation

CiaranOMara commented Apr 20, 2023

github-actions bot commented Apr 20, 2023

Judge result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Target

Baseline

Target result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Baseline result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Runtime information

kescobo left a comment

Choose a reason for hiding this comment

CiaranOMara commented Apr 27, 2023

kescobo left a comment

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github-actions bot commented Apr 29, 2023

Judge result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Target

Baseline

Target result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Baseline result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Runtime information

github-actions bot commented Apr 29, 2023

Judge result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Target

Baseline

Target result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Baseline result

Benchmark Report for /home/runner/work/GenomicFeatures.jl/GenomicFeatures.jl

Job Properties

Results

Benchmark Group List

Julia versioninfo

Runtime information

CiaranOMara commented May 1, 2023