From several forum posts, it was clear that for large tiles and large fields of view, the extension was having issues.
This caused tiles to be empty and the detections being incomplete.
It seems like it was caused by the way we used to read objects in using JTS.
This new update changes the way label images are converted to QuPath objects by using the same strategy as LaRoMe's Labels2Rois
https://github.com/BIOP/ijp-LaRoMe/blob/master/src/main/java/ch/epfl/biop/ij2command/Labels2Rois.java
Fundamentally, this should not change the way cells are detected now vs before, though no testing has been done. One thing to note is that if Cellpose ever allows for objects with holes to be detected, then the current strategy will need to be changed again.
What's Changed
Full Changelog: v0.9.5...v0.9.6
