BioImaging And Optics Platform (BIOP)
- 59 followers
- Lausanne, Switzerland
- https://biop.epfl.ch
Popular repositories Loading
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qupath-extension-cellpose
qupath-extension-cellpose Publican extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.
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ijp-imagetoatlas
ijp-imagetoatlas PublicABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
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ijl-utilities-wrappers
ijl-utilities-wrappers PublicWrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
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qupath-extension-warpy
qupath-extension-warpy PublicImgLib2 RealTransform brought to QuPath
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qupath-groovy-python-runner
qupath-groovy-python-runner PublicA proof of concept to run python segmentations and recovering the results within QuPath
Groovy 19
Repositories
- ijp-imagetoatlas Public
ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
BIOP/ijp-imagetoatlas’s past year of commit activity - ijp-kheops Public
BIOP/ijp-kheops’s past year of commit activity - ijl-utilities-wrappers Public
Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)
BIOP/ijl-utilities-wrappers’s past year of commit activity - bigdataviewer-playground-display Public
Display additions for bigdataviewer using bigdataviewer-playground
BIOP/bigdataviewer-playground-display’s past year of commit activity