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lacan authored Feb 2, 2023
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# QuPath Cellpose extension

This repo adds some support to use 2D Cellpose within QuPath through a Python virtual environment.
> **Warning**
> Versions above v0.6.0 of this extension **will only work on QuPath 0.4.0 or later**. Please update QuPath to the latest version
This repo adds some support to use 2D Cellpose within QuPath through a Python virtual environment.

# Installation


## Step 1: Install Cellpose

Follow the instructions to install Cellpose from [the main Cellpose repository](https://github.com/mouseland/cellpose).
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## Step 2: Install the QuPath Cellpose extension

Download the latest `qupath-extension-cellpose-[version].zip` file from [releases](https://github.com/biop/qupath-extension-cellpose/releases) and unzip it into your `extensions` directory.

If your extensions directory is unset, unzip and drag & drop `qupath-extension-cellpose-[version].jar` onto the main QuPath window. You'll be prompted to select a QuPath user directory.
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