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adds new test files, adds safeguards to comparisons
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NicoKiaru committed Oct 23, 2023
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1 change: 1 addition & 0 deletions .gitignore
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/target/
*.tmp.bak

/ignore/
18 changes: 18 additions & 0 deletions compare/0.7_L_side_LSO_b6_7_Nissl_first.flat_true.stitch_false.md
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| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |13 ms|20 ms| |
| Reader Size (Mb) | |1.33|1.93| |
# [0.7_L_side_LSO_b6_7_Nissl_first.czi](https://zenodo.org/record/6795923/files/0.7_L_side_LSO_b6_7_Nissl_first.czi) report
- **Autostitch** = false
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |45 ms|------|63 ms|------|--------|
|0|![0.7_L_side_LSO_b6_7_Nissl_first.quick_true.flat_true.stitch_false.series_0.jpg](0.7_L_side_LSO_b6_7_Nissl_first/0.7_L_side_LSO_b6_7_Nissl_first.quick_true.flat_true.stitch_false.series_0.jpg)|X:1024<br>Y:1024<br>C:1<br>Z:1<br>T:1|![0.7_L_side_LSO_b6_7_Nissl_first.quick_false.flat_true.stitch_false.series_0.jpg](0.7_L_side_LSO_b6_7_Nissl_first/0.7_L_side_LSO_b6_7_Nissl_first.quick_false.flat_true.stitch_false.series_0.jpg)|X:1024<br>Y:1024<br>C:1<br>Z:1<br>T:1|0|

# Metadata

18 changes: 18 additions & 0 deletions compare/0.7_L_side_LSO_b6_7_Nissl_first.flat_true.stitch_true.md
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| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |14 ms|21 ms| |
| Reader Size (Mb) | |1.33|1.93| |
# [0.7_L_side_LSO_b6_7_Nissl_first.czi](https://zenodo.org/record/6795923/files/0.7_L_side_LSO_b6_7_Nissl_first.czi) report
- **Autostitch** = true
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |45 ms|------|64 ms|------|--------|
|0|![0.7_L_side_LSO_b6_7_Nissl_first.quick_true.flat_true.stitch_true.series_0.jpg](0.7_L_side_LSO_b6_7_Nissl_first/0.7_L_side_LSO_b6_7_Nissl_first.quick_true.flat_true.stitch_true.series_0.jpg)|X:1024<br>Y:1024<br>C:1<br>Z:1<br>T:1|![0.7_L_side_LSO_b6_7_Nissl_first.quick_false.flat_true.stitch_true.series_0.jpg](0.7_L_side_LSO_b6_7_Nissl_first/0.7_L_side_LSO_b6_7_Nissl_first.quick_false.flat_true.stitch_true.series_0.jpg)|X:1024<br>Y:1024<br>C:1<br>Z:1<br>T:1|0|

# Metadata

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18 changes: 18 additions & 0 deletions compare/03_12_2020_DSGN0673_fov_11_561.flat_true.stitch_false.md
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| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |17 ms|8 ms| |
| Reader Size (Mb) | |0.18|0.26| |
# [03_12_2020_DSGN0673_fov_11_561.czi](https://zenodo.org/record/4017923/files/03_12_2020_DSGN0673_fov_11_561.czi) report
- **Autostitch** = false
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |675 ms|------|761 ms|------|--------|
|0|![03_12_2020_DSGN0673_fov_11_561.quick_true.flat_true.stitch_false.series_0.jpg](03_12_2020_DSGN0673_fov_11_561/03_12_2020_DSGN0673_fov_11_561.quick_true.flat_true.stitch_false.series_0.jpg)|X:2000<br>Y:2000<br>C:14<br>Z:1<br>T:1|![03_12_2020_DSGN0673_fov_11_561.quick_false.flat_true.stitch_false.series_0.jpg](03_12_2020_DSGN0673_fov_11_561/03_12_2020_DSGN0673_fov_11_561.quick_false.flat_true.stitch_false.series_0.jpg)|X:2000<br>Y:2000<br>C:14<br>Z:1<br>T:1|0|

# Metadata

18 changes: 18 additions & 0 deletions compare/03_12_2020_DSGN0673_fov_11_561.flat_true.stitch_true.md
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| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |5 ms|5 ms| |
| Reader Size (Mb) | |0.18|0.26| |
# [03_12_2020_DSGN0673_fov_11_561.czi](https://zenodo.org/record/4017923/files/03_12_2020_DSGN0673_fov_11_561.czi) report
- **Autostitch** = true
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |679 ms|------|775 ms|------|--------|
|0|![03_12_2020_DSGN0673_fov_11_561.quick_true.flat_true.stitch_true.series_0.jpg](03_12_2020_DSGN0673_fov_11_561/03_12_2020_DSGN0673_fov_11_561.quick_true.flat_true.stitch_true.series_0.jpg)|X:2000<br>Y:2000<br>C:14<br>Z:1<br>T:1|![03_12_2020_DSGN0673_fov_11_561.quick_false.flat_true.stitch_true.series_0.jpg](03_12_2020_DSGN0673_fov_11_561/03_12_2020_DSGN0673_fov_11_561.quick_false.flat_true.stitch_true.series_0.jpg)|X:2000<br>Y:2000<br>C:14<br>Z:1<br>T:1|0|

# Metadata

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Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |11 ms|4 ms| |
| Reader Size (Mb) | |0.18|0.26| |
# [09_10_2018_hiprfish_mix_1_fov_10_561.czi](https://zenodo.org/record/3457096/files/09_10_2018_hiprfish_mix_1_fov_10_561.czi) report
- **Autostitch** = false
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |163 ms|------|214 ms|------|--------|
|0|![09_10_2018_hiprfish_mix_1_fov_10_561.quick_true.flat_true.stitch_false.series_0.jpg](09_10_2018_hiprfish_mix_1_fov_10_561/09_10_2018_hiprfish_mix_1_fov_10_561.quick_true.flat_true.stitch_false.series_0.jpg)|X:1000<br>Y:1000<br>C:14<br>Z:1<br>T:1|![09_10_2018_hiprfish_mix_1_fov_10_561.quick_false.flat_true.stitch_false.series_0.jpg](09_10_2018_hiprfish_mix_1_fov_10_561/09_10_2018_hiprfish_mix_1_fov_10_561.quick_false.flat_true.stitch_false.series_0.jpg)|X:1000<br>Y:1000<br>C:14<br>Z:1<br>T:1|0|

# Metadata

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@@ -0,0 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |4 ms|4 ms| |
| Reader Size (Mb) | |0.18|0.26| |
# [09_10_2018_hiprfish_mix_1_fov_10_561.czi](https://zenodo.org/record/3457096/files/09_10_2018_hiprfish_mix_1_fov_10_561.czi) report
- **Autostitch** = true
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |174 ms|------|206 ms|------|--------|
|0|![09_10_2018_hiprfish_mix_1_fov_10_561.quick_true.flat_true.stitch_true.series_0.jpg](09_10_2018_hiprfish_mix_1_fov_10_561/09_10_2018_hiprfish_mix_1_fov_10_561.quick_true.flat_true.stitch_true.series_0.jpg)|X:1000<br>Y:1000<br>C:14<br>Z:1<br>T:1|![09_10_2018_hiprfish_mix_1_fov_10_561.quick_false.flat_true.stitch_true.series_0.jpg](09_10_2018_hiprfish_mix_1_fov_10_561/09_10_2018_hiprfish_mix_1_fov_10_561.quick_false.flat_true.stitch_true.series_0.jpg)|X:1000<br>Y:1000<br>C:14<br>Z:1<br>T:1|0|

# Metadata

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@@ -0,0 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |299 ms|8 ms| |
| Reader Size (Mb) | |0.26|0.35| |
# [09_10_2018_hiprfish_mix_1_fov_15_405.czi](https://zenodo.org/record/3457096/files/09_10_2018_hiprfish_mix_1_fov_15_405.czi) report
- **Autostitch** = false
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |392 ms|------|511 ms|------|--------|
|0|![09_10_2018_hiprfish_mix_1_fov_15_405.quick_true.flat_true.stitch_false.series_0.jpg](09_10_2018_hiprfish_mix_1_fov_15_405/09_10_2018_hiprfish_mix_1_fov_15_405.quick_true.flat_true.stitch_false.series_0.jpg)|X:1000<br>Y:1000<br>C:32<br>Z:1<br>T:1|![09_10_2018_hiprfish_mix_1_fov_15_405.quick_false.flat_true.stitch_false.series_0.jpg](09_10_2018_hiprfish_mix_1_fov_15_405/09_10_2018_hiprfish_mix_1_fov_15_405.quick_false.flat_true.stitch_false.series_0.jpg)|X:1000<br>Y:1000<br>C:32<br>Z:1<br>T:1|0|

# Metadata

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@@ -0,0 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |7 ms|7 ms| |
| Reader Size (Mb) | |0.26|0.35| |
# [09_10_2018_hiprfish_mix_1_fov_15_405.czi](https://zenodo.org/record/3457096/files/09_10_2018_hiprfish_mix_1_fov_15_405.czi) report
- **Autostitch** = true
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |403 ms|------|462 ms|------|--------|
|0|![09_10_2018_hiprfish_mix_1_fov_15_405.quick_true.flat_true.stitch_true.series_0.jpg](09_10_2018_hiprfish_mix_1_fov_15_405/09_10_2018_hiprfish_mix_1_fov_15_405.quick_true.flat_true.stitch_true.series_0.jpg)|X:1000<br>Y:1000<br>C:32<br>Z:1<br>T:1|![09_10_2018_hiprfish_mix_1_fov_15_405.quick_false.flat_true.stitch_true.series_0.jpg](09_10_2018_hiprfish_mix_1_fov_15_405/09_10_2018_hiprfish_mix_1_fov_15_405.quick_false.flat_true.stitch_true.series_0.jpg)|X:1000<br>Y:1000<br>C:32<br>Z:1<br>T:1|0|

# Metadata

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Original file line number Diff line number Diff line change
@@ -1,18 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |16 ms|15 ms| |
| Reader Size (Mb) | |1.90|2.73| |
# [10.5 dpc vegfc gapdh Pecam wt 1.czi](https://zenodo.org/record/7430767/files/10.5%20dpc%20vegfc%20gapdh%20Pecam%20wt%201.czi) report
- **Autostitch** = false
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.1.8-SNAPSHOT
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |46 ms|------|52 ms|------|--------|
| Read time (all) |45 ms|------|55 ms|------|--------|
|0|![10.5 dpc vegfc gapdh Pecam wt 1.quick_true.flat_true.stitch_false.series_0.jpg](10.5 dpc vegfc gapdh Pecam wt 1/10.5 dpc vegfc gapdh Pecam wt 1.quick_true.flat_true.stitch_false.series_0.jpg)|X:512<br>Y:512<br>C:3<br>Z:1<br>T:1|![10.5 dpc vegfc gapdh Pecam wt 1.quick_false.flat_true.stitch_false.series_0.jpg](10.5 dpc vegfc gapdh Pecam wt 1/10.5 dpc vegfc gapdh Pecam wt 1.quick_false.flat_true.stitch_false.series_0.jpg)|X:512<br>Y:512<br>C:3<br>Z:1<br>T:1|0|

# Metadata

| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |15 ms|15 ms| |
| Reader Size (Mb) | |1.89|2.71| |
12 changes: 6 additions & 6 deletions compare/10.5 dpc vegfc gapdh Pecam wt 1.flat_true.stitch_true.md
Original file line number Diff line number Diff line change
@@ -1,18 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |15 ms|15 ms| |
| Reader Size (Mb) | |1.90|2.73| |
# [10.5 dpc vegfc gapdh Pecam wt 1.czi](https://zenodo.org/record/7430767/files/10.5%20dpc%20vegfc%20gapdh%20Pecam%20wt%201.czi) report
- **Autostitch** = true
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.1.8-SNAPSHOT
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |46 ms|------|51 ms|------|--------|
| Read time (all) |48 ms|------|53 ms|------|--------|
|0|![10.5 dpc vegfc gapdh Pecam wt 1.quick_true.flat_true.stitch_true.series_0.jpg](10.5 dpc vegfc gapdh Pecam wt 1/10.5 dpc vegfc gapdh Pecam wt 1.quick_true.flat_true.stitch_true.series_0.jpg)|X:512<br>Y:512<br>C:3<br>Z:1<br>T:1|![10.5 dpc vegfc gapdh Pecam wt 1.quick_false.flat_true.stitch_true.series_0.jpg](10.5 dpc vegfc gapdh Pecam wt 1/10.5 dpc vegfc gapdh Pecam wt 1.quick_false.flat_true.stitch_true.series_0.jpg)|X:512<br>Y:512<br>C:3<br>Z:1<br>T:1|0|

# Metadata

| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |15 ms|14 ms| |
| Reader Size (Mb) | |1.89|2.71| |
18 changes: 18 additions & 0 deletions compare/190729S LP x63Z mCK13rCK17.flat_true.stitch_false.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |11 ms|4 ms| |
| Reader Size (Mb) | |0.19|0.34| |
# [190729S LP x63Z mCK13rCK17.czi](https://zenodo.org/record/4283106/files/190729S%20LP%20x63Z%20mCK13rCK17.czi) report
- **Autostitch** = false
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |14 ms|------|24 ms|------|--------|
|0|![190729S LP x63Z mCK13rCK17.quick_true.flat_true.stitch_false.series_0.jpg](190729S LP x63Z mCK13rCK17/190729S LP x63Z mCK13rCK17.quick_true.flat_true.stitch_false.series_0.jpg)|X:512<br>Y:512<br>C:3<br>Z:32<br>T:1|![190729S LP x63Z mCK13rCK17.quick_false.flat_true.stitch_false.series_0.jpg](190729S LP x63Z mCK13rCK17/190729S LP x63Z mCK13rCK17.quick_false.flat_true.stitch_false.series_0.jpg)|X:512<br>Y:512<br>C:3<br>Z:32<br>T:1|0|

# Metadata

18 changes: 18 additions & 0 deletions compare/190729S LP x63Z mCK13rCK17.flat_true.stitch_true.md
Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |5 ms|6 ms| |
| Reader Size (Mb) | |0.19|0.34| |
# [190729S LP x63Z mCK13rCK17.czi](https://zenodo.org/record/4283106/files/190729S%20LP%20x63Z%20mCK13rCK17.czi) report
- **Autostitch** = true
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |17 ms|------|22 ms|------|--------|
|0|![190729S LP x63Z mCK13rCK17.quick_true.flat_true.stitch_true.series_0.jpg](190729S LP x63Z mCK13rCK17/190729S LP x63Z mCK13rCK17.quick_true.flat_true.stitch_true.series_0.jpg)|X:512<br>Y:512<br>C:3<br>Z:32<br>T:1|![190729S LP x63Z mCK13rCK17.quick_false.flat_true.stitch_true.series_0.jpg](190729S LP x63Z mCK13rCK17/190729S LP x63Z mCK13rCK17.quick_false.flat_true.stitch_true.series_0.jpg)|X:512<br>Y:512<br>C:3<br>Z:32<br>T:1|0|

# Metadata

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Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |12 ms|4 ms| |
| Reader Size (Mb) | |0.19|0.33| |
# [190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.czi](https://zenodo.org/record/7994589/files/190731_EV38_1_Collagen_ITSwithAsc%2BDexa%2BIGF%2BTGF_63x_zstack_3.czi) report
- **Autostitch** = false
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |32 ms|------|44 ms|------|--------|
|0|![190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.quick_true.flat_true.stitch_false.series_0.jpg](190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3/190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.quick_true.flat_true.stitch_false.series_0.jpg)|X:1024<br>Y:1024<br>C:3<br>Z:27<br>T:1|![190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.quick_false.flat_true.stitch_false.series_0.jpg](190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3/190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.quick_false.flat_true.stitch_false.series_0.jpg)|X:1024<br>Y:1024<br>C:3<br>Z:27<br>T:1|0|

# Metadata

Original file line number Diff line number Diff line change
@@ -0,0 +1,18 @@
| Method | Parameters | Quick Start Reader | Original Reader | Delta |
| -------------------|------------------|--------------------|-----------------|------- |
| Initialization | |4 ms|5 ms| |
| Reader Size (Mb) | |0.19|0.33| |
# [190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.czi](https://zenodo.org/record/7994589/files/190731_EV38_1_Collagen_ITSwithAsc%2BDexa%2BIGF%2BTGF_63x_zstack_3.czi) report
- **Autostitch** = true
- ZeissCZIReader v6.14.0
- ZeissQuickStartCZIReader v0.2.1-SNAPSHOT

# Images

| Series | Quick Start Reader | Size | Original Reader | Size | #Diffs |
|-------------------|--------------------|------|-----------------|------|--------|
| Read time (all) |33 ms|------|43 ms|------|--------|
|0|![190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.quick_true.flat_true.stitch_true.series_0.jpg](190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3/190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.quick_true.flat_true.stitch_true.series_0.jpg)|X:1024<br>Y:1024<br>C:3<br>Z:27<br>T:1|![190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.quick_false.flat_true.stitch_true.series_0.jpg](190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3/190731_EV38_1_Collagen_ITSwithAsc+Dexa+IGF+TGF_63x_zstack_3.quick_false.flat_true.stitch_true.series_0.jpg)|X:1024<br>Y:1024<br>C:3<br>Z:27<br>T:1|0|

# Metadata

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