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67 Open 84 Closed
67 Open 84 Closed
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Issues list

link feature_comb bed file for differential analysis
#178 opened Aug 18, 2022 by alexg9010
interactive table with links to igv browsable regions
#177 opened Aug 16, 2022 by alexg9010
Introduce fallback to single end processing if pairs are mostly duplicates
#174 opened Feb 9, 2022 by alexg9010
improve argument validation
#173 opened Feb 9, 2022 by alexg9010
update faq about gtf headers
#170 opened Sep 21, 2021 by alexg9010
cryptic error when gtf annotation is missing
#168 opened Jul 8, 2021 by alexg9010
bug with names of differential_analysis
#167 opened Apr 30, 2021 by alexg9010
print tables reporting encode quality control metrics
#166 opened Apr 12, 2021 by alexg9010
improve differential analysis report feature
#165 opened Mar 11, 2021 by alexg9010
3 tasks
@alexg9010
improve error message when group column is missing
#164 opened Feb 26, 2021 by alexg9010
profile chipqc rule for memory usage enhancement
#163 opened Jan 21, 2021 by alexg9010
2 tasks
remove leading and trailing whitespaces from given target list
#162 opened Dec 15, 2020 by alexg9010
Update docs to present new differential analysis feature enhancement
#159 opened Nov 6, 2020 by alexg9010
4 tasks
show fragment length density figure in CHiPqc report when mode is ATAC wishlist
#158 opened Nov 6, 2020 by alexg9010
show feature counts results and settings in deseq report wishlist
#157 opened Nov 6, 2020 by alexg9010
change featureCounts output file to *.summary wishlist
#156 opened Nov 6, 2020 by alexg9010
Find better dataset as test data
#154 opened Nov 4, 2020 by alexg9010
3 tasks
copy settings file and sample sheet into output folder
#153 opened Sep 15, 2020 by alexg9010
mark duplicates with samblaster
#152 opened Sep 3, 2020 by alexg9010
add details about bam_filter and extract_signal to docs ... enhancement
#151 opened Aug 7, 2020 by alexg9010
validate all settings in the settings file before starting snakemake bug
#150 opened Aug 7, 2020 by alexg9010
1
symlink as fasta fails bug
#149 opened Aug 7, 2020 by alexg9010
1
multiqc creates '?' folder wontfix
#145 opened Mar 25, 2020 by alexg9010
IDR is silently failing if sample has to few peaks
#144 opened Feb 25, 2020 by alexg9010
copy settings file and sample sheet into output directory
#143 opened Feb 25, 2020 by alexg9010
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