v0.1.9

What's Changed

• clean/reports by @alexg9010 in #189
• [export_tbx2bw] skip chromosomes without mapping by @alexg9010 in #193

Breaking Changes

The specification of annotation files has changed in version 0.1.9.
Before, annotation files for cpgIslands and refGenes were given via general::differential-methylation::annotation and fetched from the web if nonexistent. The web fetching has been removed and the annotation files must now be given via the locations dictionary.

For now, we are updating the given configuration to the new default settings layout, but this will not work with annotation files with relative paths, thus, in the future, we encourage users to retrieve the new default settings layout with 'pigx-bsseq --init settings'.")

Please see #196 and #195 for instructions how to fetch the annotation files.

Full Changelog: v0.1.8...v0.1.9