clean/reports #189
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clean/reports #189
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- evaluation flags MethCall, Segmentation and AnnotateSegments are moved into chunk_eval_options - flags AnnotateDiffMeth and DiffMeth are removed
- collect scattered library loading calls at top of report
- occurred when target and feature do not have intersecting chromosomes
Signed-off-by: Alexander Blume <[email protected]>
Signed-off-by: Alexander Blume <[email protected]>
Signed-off-by: Alexander Blume <[email protected]>
-extract function Signed-off-by: Alexander Blume <[email protected]>
Signed-off-by: Alexander Blume <[email protected]>
Signed-off-by: Alexander Blume <[email protected]>
Signed-off-by: Alexander Blume <[email protected]>
Signed-off-by: Alexander Blume <[email protected]>
- remove webfetch bool from the perform_diffmeth rule and snakefile
- remove webfetch bool from the reports remove dependence on fetch_refgen_success
- update section header levels - rename 'AnnotateSegments' bool to 'Annotate' fix global annotation trigger remove unnessecary require call
check for required locations, but only verify optional locations
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Clean up reports and associated scripts.
Remove the webfetch option to download annotation files. Users should provide them beforehand.