Skip to content

Issues: BIMSBbioinfo/genomation

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

37 Open 92 Closed
37 Open 92 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Issue with annotateWithFeatures
#214 opened Sep 25, 2024 by maf222
Error when installing the package
#213 opened Apr 29, 2024 by Simple53
ScoreMatrixBin not working in version 1.35.0
#212 opened Apr 1, 2024 by shuye2009
1
Error in GenomicRangesList(features = feat, flanks = flanks) : could not find function "GenomicRangesList"
#211 opened Mar 6, 2024 by danli349
2
Error in validObject(.Object) : invalid class "ScoreMatrix" object: superclass "mMatrix" not defined in the environment of the object's class
#210 opened Feb 22, 2024 by danli349
2
Error while anotaton od methilation data for both maping to genes and CPG island
#208 opened Dec 10, 2023 by Kaustav-93
Error during annotateWithGeneParts during methylation annotation.
#207 opened Nov 20, 2023 by desmodus1984
readTranscriptFeatures default parameters
#206 opened Dec 7, 2022 by TSolDour
BedGraph support
#204 opened Feb 9, 2022 by fgualdr
Site upstream of transcription start site annotated as intronic
#203 opened Jan 26, 2022 by pkothiyal
2
output annotation meta columns
#201 opened May 18, 2021 by shawpa
[Feature request] Keep all windows in the scoreMatrix
#197 opened Jan 27, 2021 by balwierz
2
ScoreMatrix returns matrix with wrong dimensions
#196 opened Jan 27, 2021 by balwierz
ScoreMatrix incorrectly removes valid windows
#195 opened Jan 27, 2021 by balwierz
2
readTranscriptFeatures with GTF
#192 opened Jun 10, 2020 by igordot
6
invalid class “ScoreMatrix” object
#191 opened Jun 9, 2020 by LiyanJi-code
1
Error message in getTargetAnnotationStats
#190 opened May 27, 2020 by abcosta
visualzation for RRBS data
#189 opened Apr 20, 2020 by alexyfyf
extracting gene coordinates from AnnotationByGeneParts object
#186 opened Jun 4, 2019 by ghost
2
readBed parsing failure
#185 opened Jun 4, 2019 by socanas
8
scoreMatrixBin allocates 415 GB of RAM (1000 bins, 55,000 regions)
#184 opened May 18, 2019 by balwierz
2
Allow [ on ScoreMatrixList by name
#182 opened Mar 12, 2019 by balwierz
5
Bed file reading error with readTranscriptFeatures()
#181 opened Feb 13, 2019 by gladiagit
7
Integrate DelayedArray framework into genomation
#180 opened Jan 7, 2019 by katwre
list of score matrices not printed out correctly to terminal
#178 opened Jul 4, 2018 by balwierz
ProTip! Type g i on any issue or pull request to go back to the issue listing page.