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feat: register-public-key & CLI update to use options instead of args (…
…#1397) Fixes #1297 Fixes #1298 Fixes #1306 Also fix issue with noir-contracts bootstrap on MacOS # Checklist: Remove the checklist to signal you've completed it. Enable auto-merge if the PR is ready to merge. - [ ] If the pull request requires a cryptography review (e.g. cryptographic algorithm implementations) I have added the 'crypto' tag. - [ ] I have reviewed my diff in github, line by line and removed unexpected formatting changes, testing logs, or commented-out code. - [ ] Every change is related to the PR description. - [ ] I have [linked](https://docs.github.com/en/issues/tracking-your-work-with-issues/linking-a-pull-request-to-an-issue) this pull request to relevant issues (if any exist).
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