Ckpt docs #61
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Ckpt docs #61
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the checkpoints don't have to be copied there. We just need to refer to wherever it was saved in the results config under |
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maybe we can update the |
ritvikvasan
requested changes
Nov 26, 2024
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| ## Steps to run benchmarking analysis | ||
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| 1. To compute benchmarking features from the embeddings and trained models, run | ||
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| ``` | ||
| ```bash | ||
| python src/br/analysis/run_features.py --save_path "/outputs_cellpack/" --embeddings_path "./morphology_appropriate_representation_learning/model_embeddings/cellpack" --sdf False --dataset_name "cellpack" --debug False |
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we can make a similar matrix/table for both run_features and run_analysis
…ing/model_checkpoints
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Updated with instructions to download to |
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Issue
We need to explain how to download and use the checkpoints.
Closes #6
Changes
configs/experiment/cellpack/ckpts.run_embeddings.pywith a table of all 6 options.pre-commitReviewing
configs/experiment/cellpack/ckptswithout further changes? I know that's where the checkpoints are output, but I don't know if they read from there too.