Co-authored-by: bfrosik <[email protected]>

…cohere, removed preprocess script as redundant

…ed auto preprocessing to mp

* Updated multipeak phasing to work with direct phase/strain coupling

* A few bugfixes

Make sure the results get saved in the right place, etc.

* Fixed an oversight that allowed each rotated Bragg peak to have a different voxel size.

* Calculates correct voxel size for visualization

* Creates a mask which indicates post-interpolation pixels that likely have detectable signal in reciprocal space, but were beyond the scan range in one or more dimensions.

* Removed .idea directory from version control.

* Fixed broken path name (trying to load wrong config file)

* Refactored to record the B_recip matrix rather than applying the actual transform

* Add some additional useful information to the saved geometry: lattice size, rs and ds voxel size.

* Add some additional useful information to the saved geometry: final_size

* fixed crop issue

* Compatibility updates

* Fixed compatibility with Cohere's Dev branch

* Fixed bug that caused multipeak visualization to save in the wrong directory.

It was trying to save to exp_dir/results_phasing/results_viz, when it should have been saving to exp_dir/results_viz

---------

Co-authored-by: bfrosik <[email protected]>

… version to hpc