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Bladder dorsal ventral #120

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merged 10 commits into from
Feb 23, 2021
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zekh167
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@zekh167 zekh167 commented Feb 10, 2021

Dorsal, ventral annotations and marker point were added to the bladderurethra1.py.

Comment on lines 20 to 39
("Dorsal part of serosa of urinary bladder", "ILX:0739248"),
("Ventral part of serosa of urinary bladder", "ILX:0739249"),
("dorsal part of bladder lumen", "None"),
("ventral part of bladder lumen", "None"),
("dorsal part of serosa of body of urinary bladder", "ILX:0739278"),
("ventral part of serosa of body of urinary bladder", "ILX:0739279"),
("Dorsal part of lumen of body of urinary bladder", "ILX:0739250"),
("Ventral part of lumen of body of urinary bladder", "ILX:0739251"),
("dorsal part of serosa of neck of urinary bladder", "ILX:0739280"),
("ventral part of serosa of neck of urinary bladder", "ILX:0739281"),
("Dorsal part of lumen of neck of urinary bladder", "ILX:0739255"),
("Ventral part of lumen of neck of urinary bladder", "ILX:0739257"),
("dorsal part of serosa of urethra", "ILX:0739283"),
("ventral part of serosa of urethra", "ILX:0739306"),
("Dorsal part of lumen of urethra", "ILX:0739260"),
("Ventral part of lumen of urethra", "ILX:0739261"),
("dorsal part of the bladder", "None"),
("ventral part of the bladder", "None"),
("Dorsal part of urethra", "ILX:0739258"),
("Ventral part of urethra", "ILX:0739259"),
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Put all terms in alphabetical order (case insensitive).
The mix of upper and lower case is annoying; I suggest you change all to lower case as I've made scaffoldmaker match data groups differing by case and whitespace only (and it renames the data group to exactly match).

Comment on lines 40 to 41
("dorsal part of the scaffold", "None"),
("ventral part of the scaffold", "None")
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Remove these; not specific to an organ.
Find a way to do without them.

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Really minor name change then it's in.

("ventral part of serosa of neck of urinary bladder", "ILX:0739281"),
("ventral part of serosa of urethra", "ILX:0739306"),
("ventral part of serosa of urinary bladder", "ILX:0739249"),
("ventral part of the bladder", "None"),
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"ventral part of bladder".

("dorsal part of lumen of body of urinary bladder", "ILX:0739250"),
("dorsal part of lumen of neck of urinary bladder", "ILX:0739255"),
("dorsal part of lumen of urethra", "ILX:0739260"),
("dorsal part of the bladder", "None"),
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Rename to remove "the" --> "dorsal part of bladder" for consistency with other terms.
Also "ventral part of bladder" below.
(Exception: "dome of the bladder" is already in SciCrunch with "the", so can't change it).

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done.

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Also update where they are used?

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Done Richard.

@rchristie rchristie merged commit a36b3ef into ABI-Software:master Feb 23, 2021
@zekh167 zekh167 deleted the bladder_dorsal_ventral branch February 23, 2021 01:32
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2 participants