Merge pull request #120 from zekh167/bladder_dorsal_ventral

Bladder dorsal ventral
ABI-Software · Feb 23, 2021 · a36b3ef · a36b3ef
2 parents 39bc33a + 79ff779
commit a36b3ef
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diff --git a/src/scaffoldmaker/annotation/bladder_terms.py b/src/scaffoldmaker/annotation/bladder_terms.py
@@ -4,19 +4,39 @@
 
 # convention: preferred name, preferred id, followed by any other ids and alternative names
 bladder_terms = [
-    ("urinary bladder", "UBERON:0001255", "FMA:15900"),
-    ("neck of urinary bladder", "UBERON:0001258", "FMA:15912"),
-    ("Dome of the Bladder", "ILX:0738433"),
-    ("serosa of urinary bladder", "UBERON:0001260"),
     ("bladder lumen", "UBERON:0009958"),
-    ("serosa of body of urinary bladder", "ILX:0739276"),
+    ("dome of the bladder", "ILX:0738433"),
+    ("dorsal part of bladder lumen", "None"),
+    ("dorsal part of lumen of body of urinary bladder", "ILX:0739250"),
+    ("dorsal part of lumen of neck of urinary bladder", "ILX:0739255"),
+    ("dorsal part of lumen of urethra", "ILX:0739260"),
+    ("dorsal part of bladder", "None"),
+    ("dorsal part of urethra", "ILX:0739258"),
+    ("dorsal part of serosa of body of urinary bladder", "ILX:0739278"),
+    ("dorsal part of serosa of neck of urinary bladder", "ILX:0739280"),
+    ("dorsal part of serosa of urethra", "ILX:0739283"),
+    ("dorsal part of serosa of urinary bladder", "ILX:0739248"),
     ("lumen of body of urinary bladder", "ILX:0739252"),
-    ("serosa of neck of urinary bladder", "ILX:0739277"),
     ("lumen of neck of urinary bladder", "ILX:0739256"),
-    ("urethra", "UBERON:0000057", "ILX:0733022"),
-    ("lumen of urethra", "ILX:0736762"),
+    ("lumen of urethra", "UBERON:0010390", "ILX:0736762"),
+    ("neck of urinary bladder", "UBERON:0001258", "FMA:15912"),
+    ("serosa of body of urinary bladder", "ILX:0739276"),
+    ("serosa of neck of urinary bladder", "ILX:0739277"),
     ("serosa of urethra", "ILX:0739282"),
-    ("ureter", "UBERON:0000056", "ILX:0728080")
+    ("serosa of urinary bladder", "UBERON:0001260"),
+    ("ureter", "UBERON:0000056", "ILX:0728080"),
+    ("urethra", "UBERON:0000057", "ILX:0733022"),
+    ("urinary bladder", "UBERON:0001255", "FMA:15900"),
+    ("ventral part of bladder lumen", "None"),
+    ("ventral part of lumen of body of urinary bladder", "ILX:0739251"),
+    ("ventral part of lumen of neck of urinary bladder", "ILX:0739257"),
+    ("ventral part of lumen of urethra", "ILX:0739261"),
+    ("ventral part of serosa of body of urinary bladder", "ILX:0739279"),
+    ("ventral part of serosa of neck of urinary bladder", "ILX:0739281"),
+    ("ventral part of serosa of urethra", "ILX:0739306"),
+    ("ventral part of serosa of urinary bladder", "ILX:0739249"),
+    ("ventral part of bladder", "None"),
+    ("ventral part of urethra", "ILX:0739259")
 ]
 
 def get_bladder_term(name : str):