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test: [Automatic] Constraints upgrades: ipykernel
, numpy
, pandas
, partsegcore-compiled-backend
, pydantic
, scipy
, sentry-sdk
#1058
Conversation
WalkthroughThe recent updates across various Python version constraint files reflect a batch of version upgrades for multiple packages. These adjustments ensure compatibility and leverage the latest features and fixes from the Python ecosystem. Changes
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Review Status
Actionable comments generated: 0
Configuration used: CodeRabbit UI
Files selected for processing (4)
- requirements/constraints_py3.10.txt (12 hunks)
- requirements/constraints_py3.11.txt (12 hunks)
- requirements/constraints_py3.8.txt (11 hunks)
- requirements/constraints_py3.9.txt (13 hunks)
Additional comments: 42
requirements/constraints_py3.11.txt (11)
7-7: Updated
alabaster
from0.7.13
to0.7.15
. Ensure that the new version does not introduce any breaking changes or incompatibilities with the documentation generation process.43-43: Updated
comm
from0.2.0
to0.2.1
. Verify that the new version maintains compatibility withipykernel
and other communication-related functionalities.122-122: Updated
jupyter-core
from5.5.1
to5.7.0
. This is a significant version jump; ensure that it does not affect the Jupyter ecosystem functionalities within the project.139-139: Updated
lxml
from5.0.0
to5.0.1
. This minor version update is likely to include bug fixes or minor improvements. Confirm that it does not disrupt XML/HTML processing.181-181: Updated
numpy
from1.26.2
to1.26.3
. Givennumpy
's foundational role in numerical computations, ensure that this update does not introduce any regressions or incompatibilities with dependent packages.214-214: Added
packaging==23.2
. This package was not present before. Confirm that it is now a necessary dependency and that it does not conflict with existing packages.236-236: Updated
pillow
from10.1.0
to10.2.0
. As an image processing library, ensure that the update does not affect any image manipulation functionalities within the project.291-291: Updated
pyinstaller-hooks-contrib
from2023.11
to2023.12
. Verify that the new hooks are compatible with the project's packaging process.369-369: Updated
referencing
from0.32.0
to0.32.1
. Ensure that the update does not introduce issues with schema validation or referencing within the project.461-461: Updated
traitlets
from5.14.0
to5.14.1
. This minor update should be checked for compatibility with the project's configuration and command-line interfaces.493-493: Updated
wcwidth
from0.2.12
to0.2.13
. Confirm that terminal output and text formatting behave as expected after this update.requirements/constraints_py3.10.txt (11)
7-7: Updated
alabaster
from0.7.13
to0.7.15
. Ensure that the new version does not introduce any breaking changes or incompatibilities with the documentation generation process.43-43: Updated
comm
from0.2.0
to0.2.1
. Verify that the new version maintains compatibility withipykernel
and other communication-related functionalities.126-126: Updated
jupyter-core
from5.5.1
to5.7.0
. This is a significant version jump; ensure that it does not affect the Jupyter ecosystem functionalities within the project.143-143: Updated
lxml
from5.0.0
to5.0.1
. This minor version update is likely to include bug fixes or minor improvements. Confirm that it does not disrupt XML/HTML processing.185-185: Updated
numpy
from1.26.2
to1.26.3
. Givennumpy
's foundational role in numerical computations, ensure that this update does not introduce any regressions or incompatibilities with dependent packages.218-218: Added
packaging==23.2
. This package was not present before. Confirm that it is now a necessary dependency and that it does not conflict with existing packages.240-240: Updated
pillow
from10.1.0
to10.2.0
. As an image processing library, ensure that the update does not affect any image manipulation functionalities within the project.295-295: Updated
pyinstaller-hooks-contrib
from2023.11
to2023.12
. Verify that the new hooks are compatible with the project's packaging process.373-373: Updated
referencing
from0.32.0
to0.32.1
. Ensure that the update does not introduce issues with schema validation or referencing within the project.471-471: Updated
traitlets
from5.14.0
to5.14.1
. This minor update should be checked for compatibility with the project's configuration and command-line interfaces.503-503: Updated
wcwidth
from0.2.12
to0.2.13
. Confirm that terminal output and text formatting behave as expected after this update.requirements/constraints_py3.9.txt (11)
7-7: The update of
alabaster
from0.7.13
to0.7.15
seems correct and follows semantic versioning for a minor update.43-43: The update of
comm
from0.2.0
to0.2.1
is a patch version increment, which is typically for bug fixes or minor changes.132-132: The update of
jupyter-core
from5.5.1
to5.7.0
is a minor version increment. This could introduce new features without breaking backward compatibility.149-149: The update of
lxml
from5.0.0
to5.0.1
is a patch version increment, likely for bug fixes.191-191: The update of
numpy
from1.26.2
to1.26.3
is a patch version increment. Givennumpy
's widespread use in scientific computing, it's important to ensure compatibility with other packages that depend on it.224-224: The update of
packaging
from23.2
to23.3
is a minor version increment. This package is crucial for handling version constraints, so it's good to keep it updated.246-246: The update of
pillow
from10.1.0
to10.2.0
is a minor version increment. As an image processing library, it's important to ensure that this update does not affect any image manipulation functionalities in the project.301-301: The update of
pyinstaller-hooks-contrib
from2023.11
to2023.12
suggests a monthly release cycle. This package provides hooks for PyInstaller, which is used for creating standalone executables.379-379: The update of
referencing
from0.32.0
to0.32.1
is a patch version increment. This package is not widely known, so it would be good to check its changelog for any significant changes.477-477: The update of
traitlets
from5.14.0
to5.14.1
is a patch version increment.traitlets
is used for configuring objects with type validation, which is a core functionality in many applications.510-510: The update of
wcwidth
from0.2.12
to0.2.13
is a patch version increment. This package is used for determining the printable width of characters on the terminal, which can be important for CLI applications.requirements/constraints_py3.8.txt (9)
45-45: The update of
comm
from0.2.0
to0.2.1
is consistent with the update in theconstraints_py3.9.txt
file.136-136: The update of
jupyter-core
from5.5.1
to5.7.0
is also consistent with theconstraints_py3.9.txt
file.153-153: The update of
lxml
from5.0.0
to5.0.1
is a patch version increment, which is consistent across Python versions.229-229: The update of
packaging
from23.2
to23.3
is a minor version increment, which is consistent with theconstraints_py3.9.txt
file.253-253: The update of
pillow
from10.1.0
to10.2.0
is a minor version increment, which is consistent across Python versions.310-310: The update of
pyinstaller-hooks-contrib
from2023.11
to2023.12
is consistent with theconstraints_py3.9.txt
file.392-392: The update of
referencing
from0.32.0
to0.32.1
is a patch version increment, which is consistent across Python versions.490-490: The update of
traitlets
from5.14.0
to5.14.1
is a patch version increment, which is consistent with theconstraints_py3.9.txt
file.523-523: The update of
wcwidth
from0.2.12
to0.2.13
is a patch version increment, which is consistent across Python versions.
numpy
numpy
, sentry-sdk
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Review Status
Actionable comments generated: 0
Configuration used: CodeRabbit UI
Files selected for processing (4)
- requirements/constraints_py3.10.txt (16 hunks)
- requirements/constraints_py3.11.txt (16 hunks)
- requirements/constraints_py3.8.txt (14 hunks)
- requirements/constraints_py3.9.txt (17 hunks)
Additional comments: 30
requirements/constraints_py3.11.txt (17)
- 7-7: The version update for
alabaster
to0.7.16
is noted and approved.- 43-43: The version update for
comm
to0.2.1
is noted and approved.- 49-49: The version update for
dask
to2024.1.0
is noted and approved.- 103-103: The version update for
ipython
to8.20.0
is noted and approved.- 110-110: The version update for
jinja2
to3.1.3
is noted and approved.- 122-122: The version update for
jupyter-core
to5.7.1
is noted and approved.- 139-139: The version update for
lxml
to5.1.0
is noted and approved.- 181-181: The version update for
numpy
to1.26.3
is noted and approved.- 236-236: The version update for
pillow
to10.2.0
is noted and approved.- 291-291: The version update for
pyinstaller-hooks-contrib
to2023.12
is noted and approved.- 369-369: The version update for
referencing
to0.32.1
is noted and approved.- 381-381: The version update for
rpds-py
to0.17.1
is noted and approved.- 394-394: The version update for
sentry-sdk
to1.39.2
is noted and approved.- 418-428: The version updates for
sphinx
and its associated contrib packages (sphinxcontrib-applehelp
,sphinxcontrib-devhelp
,sphinxcontrib-htmlhelp
,sphinxcontrib-serializinghtml
) are noted and approved.- 461-461: The version update for
traitlets
to5.14.1
is noted and approved.- 493-493: The version update for
wcwidth
to0.2.13
is noted and approved.- 506-508: The inclusion of
setuptools
version69.0.3
as an unsafe package is acknowledged.requirements/constraints_py3.8.txt (13)
- 45-45: The update of
comm
from version 0.2.0 to 0.2.1 is noted and approved.- 102-102: The addition of
pyinstaller-hooks-contrib
at version 2023.12 is approved.- 124-124: The update of
jinja2
from version 3.1.2 to 3.1.3 is approved.- 136-136: The update of
jupyter-core
from version 5.5.1 to 5.7.1 is approved.- 153-153: The update of
lxml
from version 5.0.0 to 5.1.0 is approved.- 253-253: The update of
pillow
from version 10.1.0 to 10.2.0 is approved.- 310-310: The update of
pyinstaller-hooks-contrib
from version 2023.11 to 2023.12 is approved.- 392-392: The update of
referencing
from version 0.32.0 to 0.32.1 is approved.- 404-404: The update of
rpds-py
from version 0.16.2 to 0.17.1 is approved.- 417-417: The update of
sentry-sdk
from version 1.39.1 to 1.39.2 is approved.- 490-490: The update of
traitlets
from version 5.14.0 to 5.14.1 is approved.- 523-523: The update of
wcwidth
from version 0.2.12 to 0.2.13 is approved.- 538-540: The comment regarding
setuptools
being unsafe in a requirements file is acknowledged. This is a standard comment and does not require action.
numpy
, sentry-sdk
ipykernel
, numpy
, pandas
, partsegcore-compiled-backend
, pydantic
, scipy
, sentry-sdk
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4a3e027
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Review Status
Actionable comments generated: 0
Configuration used: CodeRabbit UI
Files selected for processing (4)
- requirements/constraints_py3.10.txt (17 hunks)
- requirements/constraints_py3.11.txt (17 hunks)
- requirements/constraints_py3.8.txt (18 hunks)
- requirements/constraints_py3.9.txt (18 hunks)
Additional comments: 43
requirements/constraints_py3.11.txt (24)
- 7-7: The version of
alabaster
has been updated from 0.7.13 to 0.7.16.- 49-49: The version of
dask
has been updated from 2023.12.1 to 2024.1.0.- 98-98: The version of
ipykernel
has been updated from 6.28.0 to 6.29.0.- 103-103: The version of
ipython
has been updated from 8.19.0 to 8.20.0.- 110-110: The version of
jinja2
has been updated from 3.1.2 to 3.1.3.- 114-114: The version of
jsonschema
has been updated from 4.20.0 to 4.21.1.- 122-122: The version of
jupyter-core
has been updated from 5.5.1 to 5.7.1.- 139-139: The version of
lxml
has been updated from 5.0.0 to 5.1.0.- 149-149: The version of
markupsafe
has been updated from 2.1.3 to 2.1.4.- 181-181: The version of
numpy
has been updated from 1.26.2 to 1.26.3.- 222-222: The version of
pandas
has been updated from 2.1.4 to 2.2.0.- 230-230: The version of
partsegcore-compiled-backend
has been updated from 0.15.1 to 0.15.2.- 236-236: The version of
pillow
has been updated from 10.1.0 to 10.2.0.- 253-253: The version of
psutil
has been updated from 5.9.7 to 5.9.8.- 270-270: The version of
pydantic
has been updated from 1.10.13 to 1.10.14.- 291-291: The version of
pyinstaller-hooks-contrib
has been updated from 2023.11 to 2024.0.- 389-389: The version of
scipy
has been updated from 1.11.4 to 1.12.0.- 394-394: The version of
sentry-sdk
has been updated from 1.39.1 to 1.39.2.- 418-418: The version of
sphinxcontrib-applehelp
has been updated from 1.0.4 to 1.0.8.- 420-420: The version of
sphinxcontrib-devhelp
has been updated from 1.0.2 to 1.0.6.- 422-422: The version of
sphinxcontrib-htmlhelp
has been updated from 2.0.1 to 2.0.5.- 428-428: The version of
sphinxcontrib-serializinghtml
has been updated from 1.1.5 to 1.1.10.- 461-461: The version of
traitlets
has been updated from 5.14.0 to 5.14.1.- 493-493: The version of
wcwidth
has been updated from 0.2.12 to 0.2.13.requirements/constraints_py3.8.txt (19)
- 45-45: The version of
comm
has been updated to0.2.1
. Ensure that this version is compatible with the rest of the application and that no breaking changes have been introduced by this update.- 112-112: The
ipykernel
package has been updated to version6.29.0
. Verify that this version does not introduce any incompatibilities with the current codebase, especially sinceipykernel
is a core dependency for interactive computing environments.- 124-124:
jinja2
has been updated to3.1.3
. Given thatjinja2
is often used for templating, ensure that all templates are still rendering correctly with this new version.- 128-128: The
jsonschema
package version has been incremented to4.21.1
. Confirm that the schemas used in the project are still valid and that the update does not affect the validation process.- 136-136:
jupyter-core
is now at version5.7.1
. As this is a dependency for various Jupyter-related packages, check that the Jupyter notebooks (if any) and related functionality operate as expected.- 153-153: The
lxml
package has been updated to5.1.0
. This library is used for parsing XML and HTML, so verify that all parsing operations are still functioning correctly.- 163-163:
markupsafe
has been updated to2.1.4
. This package is a dependency ofjinja2
, so ensure that there are no issues with the rendering of templates.- 185-185:
nest-asyncio
has been updated to1.6.0
. This package is used to patch asyncio to allow nested use of asyncio.run and loop.run_until_complete. Verify that there are no regressions in asynchronous code execution.- 229-229: The
pyinstaller-hooks-contrib
package has been updated to2024.0
. Since this package contributes additional hooks for PyInstaller, ensure that the application can still be packaged correctly without any missing dependencies.- 253-253:
pillow
has been updated to10.2.0
. As a widely used imaging library, confirm that all image processing functionalities are intact and that there are no compatibility issues with this new version.- 272-272:
psutil
has been updated to5.9.8
. This package is used for cross-platform system monitoring. Verify that all system monitoring features are working as expected.- 289-289:
pydantic
has been updated to1.10.14
. This library is used for data validation and settings management using Python type annotations. Ensure that all data models are still valid and that the application configuration is correctly handled.- 310-310: The
pyinstaller-hooks-contrib
version update has been mentioned twice. Confirm that this is intentional and not a duplicate entry.- 392-392:
referencing
has been updated to0.32.1
. Verify that all references and citations within the project's documentation are still correctly formatted and rendered.- 404-404:
rpds-py
has been updated to0.17.1
. Confirm that this update does not affect any data structures or algorithms that rely on this package.- 417-417:
sentry-sdk
has been updated to1.39.2
. Ensure that error reporting and logging are still functioning correctly and that there are no issues with the integration of Sentry.- 490-490:
traitlets
has been updated to5.14.1
. This package is a core dependency for many Jupyter and IPython-related functionalities. Verify that configuration and state management within the application are unaffected.- 523-523:
wcwidth
has been updated to0.2.13
. Since this package deals with terminal output, ensure that all CLI components of the application display text correctly.- 538-540: The
setuptools
package is marked as unsafe in a requirements file, yet it is included with version69.0.3
. Confirm that includingsetuptools
in this constraints file is necessary and that it does not introduce any security or stability issues.
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Review Status
Actionable comments generated: 0
Configuration used: CodeRabbit UI
Files selected for processing (5)
- requirements/constraints_py3.10.txt (17 hunks)
- requirements/constraints_py3.11.txt (17 hunks)
- requirements/constraints_py3.11_docs.txt (6 hunks)
- requirements/constraints_py3.8.txt (18 hunks)
- requirements/constraints_py3.9.txt (18 hunks)
Files skipped from review as they are similar to previous changes (3)
- requirements/constraints_py3.11.txt
- requirements/constraints_py3.8.txt
- requirements/constraints_py3.9.txt
Additional comments: 30
requirements/constraints_py3.11_docs.txt (6)
- 59-59: The
docutils
package has been downgraded to version0.17.1
. Ensure that this downgrade does not affect any documentation generation or parsing functionalities that may depend on newer features or bug fixes introduced in later versions.- 157-157: The
napari
package has been upgraded to version0.4.18
. Verify that this version is compatible with the current codebase and does not introduce any breaking changes, especially sincenapari
is a direct dependency of PartSeg.- 195-195: The
numpydoc
package has been upgraded to version1.5.0
. Confirm that the new version's features are being utilized correctly and that there are no conflicts with the existing documentation style and build process.- 385-385: The
sphinx
package has been upgraded to version4.5.0
. Given that Sphinx is critical for documentation, ensure that all Sphinx extensions and custom configurations are compatible with this new version.- 393-393: The
sphinx-autodoc-typehints
package has been upgraded to version1.19.1
. Check that the type hinting in the documentation still renders correctly and that there are no issues with the autodoc process.- 467-467: The
vispy
package has been upgraded to version0.12.2
. Verify that the visualizations and GUI elements powered by Vispy are functioning as expected with this new version.requirements/constraints_py3.10.txt (24)
- 7-7: The
alabaster
package has been upgraded to version0.7.16
. Confirm that the theme and styling for the Sphinx documentation are still applied correctly with this version.- 43-43: The
comm
package has been upgraded to version0.2.1
. Ensure that this upgrade does not introduce any communication issues within the IPython kernel or other components that use this package.- 49-49: The
dask
package has been upgraded to version2024.1.0
. Verify that the parallel computing functionalities are still working as expected and that there are no regressions or performance issues.- 102-102: The
ipykernel
package has been upgraded to version6.29.0
. Check for any compatibility issues with Jupyter notebooks and the execution environment.- 107-107: The
ipython
package has been upgraded to version8.20.0
. Ensure that the interactive Python shell and its integrations are functioning correctly with this new version.- 114-114: The
jinja2
package has been upgraded to version3.1.3
. Confirm that all templates and rendering processes are still operating correctly, especially in the context of Sphinx documentation generation.- 118-118: The
jsonschema
package has been upgraded to version4.21.1
. Verify that JSON schema validations across the application are still accurate and that there are no issues with data validation.- 126-126: The
jupyter-core
package has been upgraded to version5.7.1
. Ensure that the core Jupyter functionalities, such as notebook management and kernel operations, are unaffected.- 143-143: The
lxml
package has been upgraded to version5.1.0
. Confirm that XML processing, particularly in the context of data import/export, is still functioning correctly.- 153-153: The
markupsafe
package has been upgraded to version2.1.4
. Given that MarkupSafe is a dependency of Jinja2, confirm that there are no security or rendering issues in the templating engine.- 175-175: The
nest-asyncio
package has been upgraded to version1.6.0
. Verify that this does not affect the asynchronous event loop handling, especially in the context of IPython and Jupyter.- 185-185: The
numpy
package has been upgraded to version1.26.3
. Ensure that all numerical computations and data manipulations are still accurate and performant.- 226-226: The
pandas
package has been upgraded to version2.2.0
. Confirm that data analysis and manipulation functionalities are working as expected without any regressions.- 234-234: The
partsegcore-compiled-backend
package has been upgraded to version0.15.2
. As this is likely a core component of PartSeg, ensure that the backend functionalities are fully operational and compatible with the rest of the application.- 240-240: The
pillow
package has been upgraded to version10.2.0
. Verify that image processing capabilities, which are critical for PartSeg, are not adversely affected by this upgrade.- 257-257: The
psutil
package has been upgraded to version5.9.8
. Confirm that system monitoring and process management within the application are still functioning correctly.- 274-274: The
pydantic
package has been upgraded to version1.10.14
. Ensure that data validation and settings management are still accurate and that there are no issues with model schemas.- 295-295: The
pyinstaller-hooks-contrib
package has been upgraded to version2024.0
. Since this affects the packaging of the application, ensure that the build process and generated executables are not impacted negatively.- 393-393: The
scipy
package has been upgraded to version1.12.0
. Confirm that all scientific computations, especially those related to image analysis in PartSeg, are still correct and efficient.- 398-398: The
sentry-sdk
package has been upgraded to version1.39.2
. Verify that error tracking and reporting are still functioning as intended without any disruptions.- 422-432: The
sphinxcontrib-*
packages have been upgraded. Since these are various extensions for Sphinx, ensure that the documentation build process is still producing the expected results without errors or warnings.- 471-471: The
traitlets
package has been upgraded to version5.14.1
. Confirm that configuration management and communication between components are still reliable.- 503-503: The
wcwidth
package has been upgraded to version0.2.13
. Ensure that this does not affect text layout and formatting in terminal interfaces or other areas where column widths are important.- 516-518: The
setuptools
package is noted as unsafe in the requirements file. Verify that the specified version69.0.3
is compatible with the build process and does not introduce any security vulnerabilities.
Quality Gate passedKudos, no new issues were introduced! 0 New issues |
This PR is automatically created and updated by PartSeg GitHub
action cron to keep bundle dependencies modules up to date.
The updated packages are:
Summary by CodeRabbit
Documentation
New Features
Bug Fixes
Please note that these updates may improve performance, security, and stability of the application. Users are encouraged to update to the latest version to take advantage of these improvements.