Update bundle dependencies.

4DNucleome · Jan 22, 2024 · 4a3e027 · 4a3e027
1 parent 41ffcfe
commit 4a3e027
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Showing 4 changed files with 121 additions and 107 deletions.
diff --git a/requirements/constraints_py3.10.txt b/requirements/constraints_py3.10.txt
@@ -4,7 +4,7 @@
 #
 #    pip-compile --allow-unsafe --extra=pyinstaller --extra=pyqt5 --extra=pyqt6 --extra=pyside2 --extra=pyside6 --extra=test --output-file=requirements/constraints_py3.10.txt --strip-extras requirements/version_denylist.txt setup.cfg
 #
-alabaster==0.7.13
+alabaster==0.7.16
     # via sphinx
 altgraph==0.17.4
     # via pyinstaller
@@ -40,13 +40,13 @@ click==8.1.7
     #   typer
 cloudpickle==3.0.0
     # via dask
-comm==0.2.0
+comm==0.2.1
     # via ipykernel
 coverage==7.4.0
     # via PartSeg (setup.cfg)
 czifile==2019.7.2
     # via PartSeg (setup.cfg)
-dask==2023.12.1
+dask==2024.1.0
     # via
     #   dask
     #   napari
@@ -99,31 +99,31 @@ in-n-out==0.1.9
     # via app-model
 iniconfig==2.0.0
     # via pytest
-ipykernel==6.28.0
+ipykernel==6.29.0
     # via
     #   PartSeg (setup.cfg)
     #   napari-console
     #   qtconsole
-ipython==8.19.0
+ipython==8.20.0
     # via
     #   PartSeg (setup.cfg)
     #   ipykernel
     #   napari-console
 jedi==0.19.1
     # via ipython
-jinja2==3.1.2
+jinja2==3.1.3
     # via
     #   numpydoc
     #   sphinx
-jsonschema==4.20.0
+jsonschema==4.21.1
     # via napari
 jsonschema-specifications==2023.12.1
     # via jsonschema
 jupyter-client==8.6.0
     # via
     #   ipykernel
     #   qtconsole
-jupyter-core==5.5.1
+jupyter-core==5.7.1
     # via
     #   ipykernel
     #   jupyter-client
@@ -140,7 +140,7 @@ local-migrator==0.1.9
     #   nme
 locket==1.0.0
     # via partd
-lxml==5.0.0
+lxml==5.1.0
     # via PartSeg (setup.cfg)
 magicgui==0.8.1
     # via
@@ -150,7 +150,7 @@ mahotas==1.4.13
     # via PartSeg (setup.cfg)
 markdown-it-py==3.0.0
     # via rich
-markupsafe==2.1.3
+markupsafe==2.1.4
     # via jinja2
 matplotlib-inline==0.1.6
     # via
@@ -172,7 +172,7 @@ napari-plugin-engine==0.2.0
     #   napari-svg
 napari-svg==0.1.10
     # via napari
-nest-asyncio==1.5.8
+nest-asyncio==1.6.0
     # via ipykernel
 networkx==3.2.1
     # via scikit-image
@@ -182,7 +182,7 @@ npe2==0.7.3
     # via
     #   -r requirements/version_denylist.txt
     #   napari
-numpy==1.26.2
+numpy==1.26.3
     # via
     #   PartSeg (setup.cfg)
     #   czifile
@@ -215,28 +215,29 @@ packaging==23.2
     #   local-migrator
     #   pooch
     #   pyinstaller
+    #   pyinstaller-hooks-contrib
     #   pytest
     #   qtconsole
     #   qtpy
     #   scikit-image
     #   sphinx
     #   superqt
     #   vispy
-pandas==2.1.4
+pandas==2.2.0
     # via
     #   PartSeg (setup.cfg)
     #   napari
 parso==0.8.3
     # via jedi
 partd==1.4.1
     # via dask
-partsegcore-compiled-backend==0.15.1
+partsegcore-compiled-backend==0.15.2
     # via PartSeg (setup.cfg)
 partsegdata==0.10.0
     # via PartSeg (setup.cfg)
 pexpect==4.9.0
     # via ipython
-pillow==10.1.0
+pillow==10.2.0
     # via
     #   imageio
     #   napari
@@ -253,7 +254,7 @@ pooch==1.8.0
     # via scikit-image
 prompt-toolkit==3.0.43
     # via ipython
-psutil==5.9.7
+psutil==5.9.8
     # via
     #   ipykernel
     #   napari
@@ -270,7 +271,7 @@ pure-eval==0.2.2
     # via stack-data
 pyconify==0.1.6
     # via superqt
-pydantic==1.10.13
+pydantic==1.10.14
     # via
     #   -r requirements/version_denylist.txt
     #   PartSeg (setup.cfg)
@@ -291,7 +292,7 @@ pygments==2.17.2
     #   superqt
 pyinstaller==6.3.0
     # via PartSeg (setup.cfg)
-pyinstaller-hooks-contrib==2023.11
+pyinstaller-hooks-contrib==2024.0
     # via pyinstaller
 pyopengl==3.1.7
     # via napari
@@ -369,7 +370,7 @@ qtpy==2.4.1
     #   qtawesome
     #   qtconsole
     #   superqt
-referencing==0.32.0
+referencing==0.32.1
     # via
     #   jsonschema
     #   jsonschema-specifications
@@ -381,20 +382,20 @@ requests==2.31.0
     #   sphinx
 rich==13.7.0
     # via npe2
-rpds-py==0.16.2
+rpds-py==0.17.1
     # via
     #   jsonschema
     #   referencing
 scikit-image==0.22.0
     # via
     #   PartSeg (setup.cfg)
     #   napari
-scipy==1.11.4
+scipy==1.12.0
     # via
     #   PartSeg (setup.cfg)
     #   napari
     #   scikit-image
-sentry-sdk==1.39.1
+sentry-sdk==1.39.2
     # via
     #   -r requirements/version_denylist.txt
     #   PartSeg (setup.cfg)
@@ -418,17 +419,17 @@ sphinx==4.5.0
     # via
     #   napari
     #   numpydoc
-sphinxcontrib-applehelp==1.0.4
+sphinxcontrib-applehelp==1.0.8
     # via sphinx
-sphinxcontrib-devhelp==1.0.2
+sphinxcontrib-devhelp==1.0.6
     # via sphinx
-sphinxcontrib-htmlhelp==2.0.1
+sphinxcontrib-htmlhelp==2.0.5
     # via sphinx
 sphinxcontrib-jsmath==1.0.1
     # via sphinx
-sphinxcontrib-qthelp==1.0.3
+sphinxcontrib-qthelp==1.0.7
     # via sphinx
-sphinxcontrib-serializinghtml==1.1.5
+sphinxcontrib-serializinghtml==1.1.10
     # via sphinx
 stack-data==0.6.3
     # via ipython
@@ -467,7 +468,7 @@ tqdm==4.66.1
     # via napari
 traceback-with-variables==2.0.4
     # via PartSeg (setup.cfg)
-traitlets==5.14.0
+traitlets==5.14.1
     # via
     #   comm
     #   ipykernel
@@ -499,7 +500,7 @@ vispy==0.12.2
     #   PartSeg (setup.cfg)
     #   napari
     #   napari-svg
-wcwidth==0.2.12
+wcwidth==0.2.13
     # via prompt-toolkit
 wrapt==1.16.0
     # via napari
@@ -512,4 +513,6 @@ zipp==3.17.0
 
 # The following packages are considered to be unsafe in a requirements file:
 setuptools==69.0.3
-    # via pyinstaller
+    # via
+    #   pyinstaller
+    #   pyinstaller-hooks-contrib