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update documentation
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zwdzwd committed Oct 3, 2016
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7 changes: 7 additions & 0 deletions docs/source/annotation_from_protein_level.rst
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Expand Up @@ -194,6 +194,13 @@ Frame-shift variants can be results of either insertion or deletion. In the case
::

PTEN:p.T319fs*1 NM_000314 (protein_coding) PTEN +
chr10:g.89720803_89720804insTA/c.954_955insTA/p.T319fs*1 inside_[cds_in_exon_8]
CSQN=Frameshift;left_align_cDNA=c.954_955insTA;left_align_gDNA=g.89720803_897
20804insTA;candidates=g.89720803_89720804insTG/c.954_955insTG/g.89720803_8972
0804insTG/c.954_955insTG,g.89720804_89720807delACTT/c.955_958delACTT/g.897207
99_89720802delTACT/c.950_953delTACT;dbxref=GeneID:5728,HGNC:9588,MIM:601728;a
liases=NP_000305;source=RefSeq

In this example, both deletion `c.950_953delTACT` and insertion `c.954_955insTA` are possible. Both insertion involves fewer nucleotides and is chosen as the most likely inference. Deletion is given in the `candidates` tag.

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2 changes: 1 addition & 1 deletion transvar/version.py
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@@ -1 +1 @@
__version__ = '2.2.14.20161002'
__version__ = '2.2.15.20161002'

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