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zhixingfeng · May 11, 2020 · 0bd7783 · 0bd7783
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diff --git a/ont/ont_context_effect_read_qv_10_base_qv_0/train_A/boosting.conf b/ont/ont_context_effect_read_qv_10_base_qv_0/train_A/boosting.conf
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+booster = gbtree
+
+objective = reg:logistic
+
+nthread = 16
+
+num_round = 2000
+
+max_depth = 10
+
+eta = 0.1
+
+gamma = 0
+
+min_child_weight = 1
+
+eval_train = 1
+
+save_period = 0
+
+data = ../results/ont/train_model/ont_context_effect_read_qv_10_base_qv_0/train_dat_A.txt
+
+model_out = ../results/ont/train_model/ont_context_effect_read_qv_10_base_qv_0/train_A/boosting.model
diff --git a/ont/ont_context_effect_read_qv_10_base_qv_0/train_A/boosting.model b/ont/ont_context_effect_read_qv_10_base_qv_0/train_A/boosting.model
diff --git a/ont/ont_context_effect_read_qv_10_base_qv_0/train_C/boosting.conf b/ont/ont_context_effect_read_qv_10_base_qv_0/train_C/boosting.conf
@@ -0,0 +1,23 @@
+booster = gbtree
+
+objective = reg:logistic
+
+nthread = 16
+
+num_round = 2000
+
+max_depth = 10
+
+eta = 0.1
+
+gamma = 0
+
+min_child_weight = 1
+
+eval_train = 1
+
+save_period = 0
+
+data = ../results/ont/train_model/ont_context_effect_read_qv_10_base_qv_0/train_dat_C.txt
+
+model_out = ../results/ont/train_model/ont_context_effect_read_qv_10_base_qv_0/train_C/boosting.model
diff --git a/ont/ont_context_effect_read_qv_10_base_qv_0/train_C/boosting.model b/ont/ont_context_effect_read_qv_10_base_qv_0/train_C/boosting.model
diff --git a/ont/ont_context_effect_read_qv_10_base_qv_0/train_G/boosting.conf b/ont/ont_context_effect_read_qv_10_base_qv_0/train_G/boosting.conf
@@ -0,0 +1,23 @@
+booster = gbtree
+
+objective = reg:logistic
+
+nthread = 16
+
+num_round = 2000
+
+max_depth = 10
+
+eta = 0.1
+
+gamma = 0
+
+min_child_weight = 1
+
+eval_train = 1
+
+save_period = 0
+
+data = ../results/ont/train_model/ont_context_effect_read_qv_10_base_qv_0/train_dat_G.txt
+
+model_out = ../results/ont/train_model/ont_context_effect_read_qv_10_base_qv_0/train_G/boosting.model
diff --git a/ont/ont_context_effect_read_qv_10_base_qv_0/train_G/boosting.model b/ont/ont_context_effect_read_qv_10_base_qv_0/train_G/boosting.model
diff --git a/ont/ont_context_effect_read_qv_10_base_qv_0/train_T/boosting.conf b/ont/ont_context_effect_read_qv_10_base_qv_0/train_T/boosting.conf
@@ -0,0 +1,23 @@
+booster = gbtree
+
+objective = reg:logistic
+
+nthread = 16
+
+num_round = 2000
+
+max_depth = 10
+
+eta = 0.1
+
+gamma = 0
+
+min_child_weight = 1
+
+eval_train = 1
+
+save_period = 0
+
+data = ../results/ont/train_model/ont_context_effect_read_qv_10_base_qv_0/train_dat_T.txt
+
+model_out = ../results/ont/train_model/ont_context_effect_read_qv_10_base_qv_0/train_T/boosting.model
diff --git a/ont/ont_context_effect_read_qv_10_base_qv_0/train_T/boosting.model b/ont/ont_context_effect_read_qv_10_base_qv_0/train_T/boosting.model