Fix Input contains NaN error

ythuang0522 · Sep 5, 2021 · 97cf8d5 · 97cf8d5
1 parent 37514db
commit 97cf8d5
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Showing 3 changed files with 5 additions and 5 deletions.
diff --git a/modules/alignment.py b/modules/alignment.py
@@ -62,9 +62,9 @@ def pileup(paf, genome_size):
 
                     elif flag == 1:
                         longdel_count = 0
-                        arr[start_pos][base] += 1 #ex. 100bp ?ºA arr1[100][0] = 1
+                        arr[start_pos][base] += 1 #arr1[100][0] = 1
                         coverage[start_pos] += 1
-                        start_pos += 1 #?›ä?ä¸€bp
+                        start_pos += 1 
                     elif flag == 2: 
                         # *gc
                         # -01
@@ -73,7 +73,8 @@ def pileup(paf, genome_size):
                         if mismatch != 1:
                             mismatch += 1
                         else:
-                            arr[start_pos][base] += 1 #ä¸å?mismatchç´€??                            coverage[start_pos] += 1 
+                            arr[start_pos][base] += 1 #Mismatch position
+                            coverage[start_pos] += 1 
                             start_pos += 1
 
                     elif flag == 3: 

diff --git a/modules/polish_interface.py b/modules/polish_interface.py
@@ -267,7 +267,6 @@ def without_genus(out, assembly_name, output_dir_debug, mash_screen, assembly, m
         '''
         # download homologous
         download_path = download_action(ncbi_id, contig_output_dir,contig_name)
-
         # alignment
         paf = alignment.align(contig_name, minimap_args, threads, download_path, contig_output_dir)
 

diff --git a/version.py b/version.py
@@ -1 +1 @@
-__version__ = "0.2.3"
+__version__ = "0.3.2"