feat: Update project versions to 1.2.2

.bumpversion.toml

@@ -1,7 +1,7 @@
 # bump-my-version bump minor --allow-dirty        
 
 [tool.bumpversion]
-current_version = "1.2.1"
+current_version = "1.2.2"
 parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)"
 serialize = ["{major}.{minor}.{patch}"]
 search = "{current_version}"

Cargo.toml

@@ -1,6 +1,6 @@
 [package]
 name = "deepchopper"
-version = "1.2.1"
+version = "1.2.2"
 edition = "2021"
 authors = ["Yangyang Li <[email protected]>"]
 description = "A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing"

py_cli/pyproject.toml

@@ -1,10 +1,10 @@
 [build-system]
-requires = ["maturin>=1.2.1,<2"]
+requires = ["maturin>=1.2.2,<2"]
 build-backend = "maturin"
 
 [project]
 name = "deepchopper-cli"
-version = "1.2.1"
+version = "1.2.2"
 description = "CLI for DeepChopper: A Genomic Language Model for Chimera Artifact Detection"
 authors = [{ name = "Yangyang Li", email = "[email protected]" }]
 requires-python = ">=3.10"

pyproject.toml

@@ -1,12 +1,12 @@
 [build-system]
-requires = ["maturin>=1.2.1,<2"]
+requires = ["maturin>=1.2.2,<2"]
 build-backend = "maturin"
 
 [tool.poetry]
 authors = ["Yangyang Li <[email protected]>"]
 license = "Apache-2.0"
 name = "deepchopper"
-version = "1.2.1"
+version = "1.2.2"
 description = "A Genomic Language Model for Chimera Artifact Detection in Nanopore Direct RNA Sequencing"
 readme = "README.md"
 
@@ -36,7 +36,7 @@ classifiers = [
 dependencies = [
     "torch>=2.1.0",
     "lightning>=2.1.2",
-    "torchmetrics>=1.2.1",
+    "torchmetrics>=1.2.2",
     "rich>=13.7.0",
     "transformers>=4.37.2",
     "safetensors>=0.4.2",
@@ -81,7 +81,7 @@ torch = [
     { version = "^2.1.0", source = "PyPI", markers = "sys_platform == 'darwin'" },
 ]
 lightning = "^2.1.2"
-torchmetrics = "^1.2.1"
+torchmetrics = "^1.2.2"
 rich = "^13.7.0"
 transformers = "^4.37.2"
 safetensors = "^0.4.2"
@@ -127,14 +127,14 @@ seaborn = "^0.13.2"
 fire = "^0.5.0"
 wandb = "^0.17.0"
 ruff = "^0.4.7"
-hydra-submitit-launcher = "^1.2.1"
+hydra-submitit-launcher = "^1.2.2"
 onnx = "^1.16.0"
 onnxscript = "^0.1.0.dev20240407"
 plotly = "^5.20.0"
 joblib = "^1.4.0"
 hydra-core = "^1.3.2"
-hydra-colorlog = "^1.2.1"
-hydra-optuna-sweeper = "^1.2.1"
+hydra-colorlog = "^1.2.2"
+hydra-optuna-sweeper = "^1.2.2"
 omegaconf = "^2.3.0"
 accelerate = "^0.27.2"
 deepspeed = "^0.13.4"
@@ -150,8 +150,8 @@ nvidia-cusparse-cu11 = { version = "^11.7.5.86", markers = "sys_platform == 'lin
 nvidia-nccl-cu11 = { version = "^2.19.3", markers = "sys_platform == 'linux'" }
 nvidia-nvtx-cu11 = { version = "^11.8.86", markers = "sys_platform == 'linux'" }
 nvidia-cublas-cu11 = { version = "^11.11.3.6", markers = "sys_platform == 'linux'" }
-mamba-ssm = { version = "^1.2.1.post1", markers = "sys_platform == 'linux'" }
-causal-conv1d = { version = "^1.2.1.post2", markers = "sys_platform == 'linux'" }
+mamba-ssm = { version = "^1.2.2.post1", markers = "sys_platform == 'linux'" }
+causal-conv1d = { version = "^1.2.2.post2", markers = "sys_platform == 'linux'" }
 bump-my-version = "^0.27.0"
 
 [tool.ruff]