docs: Add link to updated documentation in README.md

CONTRIBUTING.md

@@ -0,0 +1,70 @@
+# Contributing to DeepChopper
+
+We welcome contributions to DeepChopper! This document provides guidelines for contributing to the project.
+
+## Getting Started
+
+1. Fork the repository on GitHub.
+2. Clone your fork locally:
+
+   ```bash
+   git clone https://github.com/ylab-hi/DeepChopper.git
+   cd DeepChopper
+   ```
+
+3. Set up your development environment:
+
+   ```bash
+   conda env create -n environment.yaml
+   conda activate deepchopper
+   pip install pipx
+   pipx install --suffix @master git+https://github.com/python-poetry/poetry.git@master
+   poetry@master install
+   ```
+
+## Making Changes
+
+1. Create a new branch for your feature or bugfix:
+
+   ```bash
+   git checkout -b feature/your-feature-name
+   ```
+
+2. Make your changes and commit them with a clear commit message.
+
+3. Push your changes to your fork on GitHub:
+
+   ```bash
+   git push origin feature/your-feature-name
+   ```
+
+4. Open a pull request against the main repository.
+
+## Coding Standards
+
+- Follow PEP 8 guidelines for Python code.
+- Write clear, concise comments and docstrings.
+- Ensure your code is compatible with Python 3.10+.
+
+## Testing
+
+- Add unit tests for new functionality.
+- Ensure all tests pass before submitting a pull request:
+
+## Documentation
+
+- Update the README.md if you're adding or changing features.
+- Add or update docstrings for new or modified functions and classes.
+
+## Submitting Pull Requests
+
+1. Ensure your PR description clearly describes the problem and solution.
+2. Include the relevant issue number if applicable.
+3. Make sure all tests pass and the code lints without errors.
+
+## Reporting Issues
+
+- Use the GitHub issue tracker to report bugs or suggest features.
+- Provide as much detail as possible, including steps to reproduce for bugs.
+
+Thank you for contributing to DeepChopper!

README.md

@@ -158,8 +158,7 @@ poetry@master install
 
 Need help? Have questions?
 
-- 📖 Check our [Documentation](./docs)
-- 💬 Join our [Community Forum](https://github.com/ylab-hi/DeepChopper/discussions)
+- 📖 Check our [Documentation](./documentation/tutorial.md)
 - 🐛 [Report issues](https://github.com/ylab-hi/DeepChopper/issues)
 
 ---

documentation/tutorial.md

@@ -131,6 +131,9 @@ This command takes the original FASTQ file (`raw.fastq`) and the predictions (`p
 - **Issue**: Unexpected results
   **Solution**: Verify input data quality and check DeepChopper version
 
+- **Issue**: GPU driver compatibility error
+  **Solution**: Update your GPU driver or install a compatible PyTorch version e.g., `pip install torch --force-reinstall --index-url https://download.pytorch.org/whl/cu118` to install a CUDA 11.8 compatible version.
+
 For more help, visit our [GitHub Issues](https://github.com/ylab-hi/DeepChopper/issues) page.
 
 Happy sequencing, and may your data be artifical-chimera-free! 🧬🔍