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PreQC Pack: A quality control tool for high throughput sequence data.

Check out the User Guide for a list of features and installation and usage information.

If you are interested in contributing to the development of preqc-pack, check out the Contribution Guide.

Why PreQC Pack?

Traditional solutions require multiple software combinations to calculate indicators for quality pre-evaluation, which is costly and time-consuming. Whether it is possible to develop a low-cost and low-resource-consumption software to generate the required pre-evaluation indicators at one time? So we develop the preqc-pack.

A collection of QC Metrics for NGS

Quality Metrics

  • checksum
  • file size

FastQC

Mislabeling (NGSCheckMate)

Performance

Installation

Build the preqc-pack on macOS.

# Clone the source code
git clone https://github.com/clinico-omics/preqc-pack.git

# Change the directory
cd preqc-pack

# For Linux
cargo build --release --target=x86_64-unknown-linux-musl

# For macOS
cargo build --release

License

All the code in this repository is released under the Mozilla Public License v2.0, for more information take a look at the LICENSE file.

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To generate the required pre-evaluation indicators at one time...

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